Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABHD13_chr13_108213392_108239243	0/0	t0016	4300	2	2	0	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0017	4300	1	0	0	1	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0018	4303	1	1	0	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0019	4300	1	1	0	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0020	4303	1	0	1	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0021	4303	1	0	1	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0022	4303	1	0	1	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0023	4300	1	0	0	0	1	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0024	4300	1	0	0	0	0	1	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0025	4300	1	0	1	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0026	4300	1	0	0	1	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/1	t0027	4300	1	0	0	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0028	4303	1	0	1	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0029	4303	1	1	0	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0030	4302	1	1	0	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0031	4306	1	1	0	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0032	4302	1	0	0	1	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0033	4306	1	1	0	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0034	4302	1	0	0	1	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0035	4299	1	0	1	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	t0036	4300	1	0	1	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD14A_chr3_51970064_51986196	1/1	t0001	251	318	63	57	140	14	42	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	0/0	t0002	255	26	25	1	0	0	0	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14B_chr3_51963515_51979049	1/1	t0001	1025	273	50	55	113	14	39	copy fasta	ABHD14B	chr3	51963515	51979049
ABHD14B_chr3_51963515_51979049	0/0	t0002	1028	24	20	0	3	0	1	copy fasta	ABHD14B	chr3	51963515	51979049
ABHD14B_chr3_51963515_51979049	0/0	t0003	1025	10	9	1	0	0	0	copy fasta	ABHD14B	chr3	51963515	51979049
ABHD14B_chr3_51963515_51979049	0/0	t0004	1028	5	4	1	0	0	0	copy fasta	ABHD14B	chr3	51963515	51979049
ABHD14B_chr3_51963515_51979049	0/0	t0005	1025	4	4	0	0	0	0	copy fasta	ABHD14B	chr3	51963515	51979049
ABHD14B_chr3_51963515_51979049	0/0	t0006	1025	3	0	0	3	0	0	copy fasta	ABHD14B	chr3	51963515	51979049
ABHD14B_chr3_51963515_51979049	0/0	t0007	1025	2	0	2	0	0	0	copy fasta	ABHD14B	chr3	51963515	51979049
ABHD14B_chr3_51963515_51979049	0/0	t0008	1025	1	0	1	0	0	0	copy fasta	ABHD14B	chr3	51963515	51979049
ABHD14B_chr3_51963515_51979049	0/0	t0009	1025	1	0	0	1	0	0	copy fasta	ABHD14B	chr3	51963515	51979049
ABHD14B_chr3_51963515_51979049	0/0	t0010	1028	1	1	0	0	0	0	copy fasta	ABHD14B	chr3	51963515	51979049
ABHD15_chr17_29555547_29572037	0/1	t0001	2086	310	64	42	156	13	34	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	1/0	t0002	2086	91	19	41	12	5	13	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	t0003	2086	5	5	0	0	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	t0004	2086	2	0	0	0	0	2	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	t0005	2086	1	1	0	0	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	t0006	2086	1	0	0	1	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	t0007	2086	1	1	0	0	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	t0008	2086	1	0	0	1	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	t0009	2086	1	1	0	0	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	t0010	2086	1	0	0	1	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	t0011	2086	1	0	0	0	0	1	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	t0012	2086	1	0	1	0	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	t0013	2086	1	0	0	1	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	t0014	2086	1	1	0	0	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD16A_chr6_31681955_31708324	0/1	t0001	301	226	36	48	96	13	32	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	t0002	301	185	56	32	79	5	13	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	t0003	301	4	0	0	3	0	1	copy fasta	ABHD16A	chr6	31681955	31708324