Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANGPTL4_chr19_8359155_8379370	0/0	t0004	652	7	7	0	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	t0005	652	5	4	1	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	t0006	652	2	2	0	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	t0007	652	2	2	0	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	t0008	652	2	2	0	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	t0009	652	1	1	0	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	t0010	652	1	0	0	1	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	t0011	652	1	1	0	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	t0012	652	1	0	0	0	0	1	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL5_chr11_101885674_101921522	1/0	t0001	1202	190	56	32	70	8	23	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/1	t0002	1202	138	13	20	86	6	12	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	t0003	1202	74	19	15	31	1	8	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	t0004	1202	4	0	0	4	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	t0005	1202	3	1	2	0	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	t0006	1202	3	3	0	0	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	t0007	1202	2	0	0	0	2	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	t0008	1202	2	0	2	0	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	t0009	1202	1	1	0	0	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	t0010	1202	1	0	1	0	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	t0011	1202	1	0	0	0	0	1	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	t0012	1202	1	0	0	1	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	t0013	1202	1	0	0	0	1	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	t0014	1202	1	1	0	0	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL6_chr19_10087338_10107678	1/1	t0001	373	448	95	80	217	12	42	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	t0002	373	8	3	4	0	1	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	t0003	373	3	0	0	0	0	3	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	t0004	262	2	0	0	0	1	1	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	t0005	373	1	0	0	1	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL7_chr1_11184355_11200981	1/1	t0001	1184	274	72	44	119	9	28	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	t0002	1184	43	9	10	14	2	8	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	t0003	1184	32	11	6	10	0	5	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	t0004	1184	6	0	4	0	1	1	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	t0005	1184	2	2	0	0	0	0	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	t0006	1184	1	1	0	0	0	0	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	t0007	1184	1	1	0	0	0	0	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	t0008	1184	1	1	0	0	0	0	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	t0009	1184	1	1	0	0	0	0	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	t0010	1184	1	0	0	1	0	0	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	t0011	1184	1	0	0	0	0	1	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	t0012	1184	1	0	0	0	0	1	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL8_chr19_11234619_11246943	1/1	t0001	276	422	96	74	192	16	42	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	t0002	276	2	0	0	2	0	0	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	t0003	276	1	0	0	0	0	1	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	t0004	276	1	0	0	0	0	1	copy fasta	ANGPTL8	chr19	11234619	11246943
ANG_chr14_20683764_20699183	1/1	t0001	305	469	97	85	225	16	44	copy fasta	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	t0002	305	1	0	1	0	0	0	copy fasta	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	t0003	305	1	1	0	0	0	0	copy fasta	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	t0004	305	1	0	0	1	0	0	copy fasta	ANG	chr14	20683764	20699183
ANHX_chr12_133213312_133240877	0/1	t0001	667	278	38	53	137	17	32	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	t0002	667	56	47	5	2	0	2	copy fasta	ANHX	chr12	133213312	133240877