JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HIVEP3_chr1_41501365_41923922	0/0	t0074	5398	1	0	1	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0075	5389	1	0	0	1	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0076	5399	1	0	0	1	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0077	5388	1	0	0	1	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0078	5398	1	0	1	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0079	5399	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0080	5385	1	0	1	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0081	5396	1	0	1	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0082	5397	1	0	1	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0083	5398	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0084	5397	1	0	1	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0085	5387	1	0	1	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	t0086	5396	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HJURP_chr2_233831702_233859535	1/1	t0001	911	197	13	31	124	10	17	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0002	903	115	13	22	51	5	24	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0003	911	30	5	5	19	0	1	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0004	903	20	0	0	19	0	1	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0005	911	18	18	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0006	904	13	4	8	0	0	1	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0007	915	12	12	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0008	915	9	8	1	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0009	911	5	0	3	0	1	1	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0010	910	5	5	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0011	917	4	4	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0012	911	4	4	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0013	904	2	0	0	1	0	1	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0014	903	2	2	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0015	903	1	1	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0016	907	1	1	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0017	917	1	1	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0018	911	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0019	911	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0020	907	1	1	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0021	903	1	1	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0022	903	1	1	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0023	903	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0024	911	1	1	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0025	904	1	0	0	0	0	1	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0026	915	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0027	903	1	0	0	0	0	1	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	t0028	915	1	1	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJV_chr1_146012470_146026735	1/1	t0001	846	374	77	72	171	12	40	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	t0002	846	4	0	0	4	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	t0003	846	2	0	0	2	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	t0004	846	1	1	0	0	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	t0005	846	1	0	0	1	0	0	copy fasta	HJV	chr1	146012470	146026735
HK1_chr10_69273496_69406882	1/0	t0001	1233	127	31	26	44	8	17	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/1	t0002	1233	86	6	19	47	1	12	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0003	1233	10	7	0	2	0	1	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0004	1234	9	7	2	0	0	0	copy fasta	HK1	chr10	69273496	69406882