JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HK1_chr10_69273496_69406882	0/0	t0005	1234	6	6	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0006	1233	5	3	2	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0007	1233	5	0	0	5	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0008	1233	4	4	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0009	1233	4	3	1	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0010	1233	3	1	2	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0011	1233	3	3	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0012	1233	2	0	0	2	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0013	1233	2	1	1	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0014	1233	2	0	1	0	1	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0015	1234	2	2	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0016	1233	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0017	1233	1	0	0	1	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0018	1233	1	0	0	1	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0019	1233	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0020	1233	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0021	1233	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0022	1233	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0023	1234	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0024	1234	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	t0025	1233	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69313847_69406882	1/1	t0001	849	244	49	54	90	13	36	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	t0002	849	20	15	0	3	0	2	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	t0003	849	7	6	1	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	t0004	849	6	5	1	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	t0005	849	6	5	1	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	t0006	849	5	4	1	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	t0007	849	2	0	1	0	1	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	t0008	849	2	0	0	2	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	t0009	849	1	0	1	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	t0010	849	1	0	0	1	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	t0011	849	1	1	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	t0012	849	1	1	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK2_chr2_74829127_74898359	1/0	t0001	2873	90	7	24	48	5	5	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0002	2872	78	8	8	41	7	14	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0003	2870	58	6	11	33	1	7	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0004	2871	19	0	0	17	0	2	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0005	2871	17	0	8	9	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0006	2871	16	15	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0007	2872	14	3	2	5	1	3	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0008	2870	11	0	2	3	2	4	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0009	2871	10	10	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0010	2871	10	9	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0011	2873	8	2	2	0	1	3	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0012	2870	6	5	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0013	2871	4	0	0	4	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0014	2871	3	0	0	2	1	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0015	2870	3	3	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0016	2869	3	3	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0017	2874	3	1	1	1	0	0	copy fasta	HK2	chr2	74829127	74898359