JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HK2_chr2_74829127_74898359	0/0	t0018	2869	2	2	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0019	2870	2	2	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0020	2873	2	2	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0021	2872	2	2	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0022	2872	2	2	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0023	2870	2	1	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0024	2871	2	1	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0025	2872	2	0	0	2	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0026	2871	1	0	0	1	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0027	2873	1	0	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0028	2870	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0029	2870	1	0	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0030	2869	1	0	0	1	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0031	2872	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0032	2872	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0033	2870	1	0	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0034	2869	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0035	2871	1	0	0	1	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0036	2874	1	0	0	0	0	1	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0037	2871	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0038	2871	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0039	2870	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0040	2872	1	0	0	0	0	1	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0041	2870	1	0	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0042	2870	1	0	0	0	0	1	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0043	2871	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0044	2869	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0045	2870	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0046	2873	1	0	0	0	0	1	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0047	2875	1	0	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0048	2870	1	0	0	1	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	t0049	2873	1	0	0	1	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/1	t0050	2870	1	0	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK3_chr5_176875869_176904346	1/1	t0001	311	380	87	61	178	15	37	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	t0002	311	26	7	13	2	1	3	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	t0003	311	1	1	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	t0004	311	1	1	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HKDC1_chr10_69215332_69272552	0/1	t0001	900	223	48	34	107	8	25	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	t0002	900	115	35	23	35	7	15	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	t0003	900	23	9	1	10	1	2	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	t0004	900	9	0	3	6	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	1/0	t0005	900	3	2	0	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	t0006	900	1	0	1	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	t0007	900	1	0	0	1	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	t0008	900	1	0	0	1	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	t0009	900	1	0	0	1	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	t0010	900	1	0	0	1	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	t0011	900	1	1	0	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	t0012	900	1	1	0	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HLA-A_chr6_29937532_29950870	0/0	t0001	438	124	19	39	53	2	11	copy fasta	HLA-A	chr6	29937532	29950870