JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HLA-A_chr6_29937532_29950870	0/0	t0002	438	63	7	8	39	4	5	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	t0003	438	63	15	3	37	0	8	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	t0004	438	35	0	3	24	0	8	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	t0005	438	32	6	1	19	3	3	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	t0006	438	27	19	5	1	1	1	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/1	t0007	438	24	7	4	5	1	6	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	t0008	438	23	8	6	2	2	5	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	1/0	t0009	438	22	5	12	2	1	1	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	t0010	438	5	4	1	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-B_chr6_31348875_31362179	1/0	t0001	448	59	17	12	22	2	5	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0002	449	49	5	9	30	1	4	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0003	448	41	1	5	32	0	3	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0004	448	41	9	9	15	1	7	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0005	448	36	2	8	17	4	5	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0006	448	31	16	5	5	0	5	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0007	448	22	0	0	21	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0008	448	22	8	10	2	0	2	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0009	448	22	2	4	14	2	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0010	448	21	0	0	19	1	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0011	448	16	0	1	11	2	2	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0012	448	12	0	0	12	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0013	448	11	3	1	3	1	3	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0014	448	10	3	1	5	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0015	448	9	5	0	3	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0016	448	9	8	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0017	448	8	7	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0018	448	6	1	4	0	1	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0019	448	5	0	4	0	1	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/1	t0020	448	5	0	0	2	0	2	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0021	448	5	1	3	0	1	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0022	448	4	1	0	3	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0023	448	4	0	0	4	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0024	448	3	0	0	1	1	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0025	448	2	0	2	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0026	448	2	0	0	0	0	2	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0027	448	2	0	2	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0028	448	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0029	448	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0030	449	1	1	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0031	448	1	0	0	0	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0032	448	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0033	448	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0034	449	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0035	448	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0036	460	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0037	448	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	t0038	448	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-C_chr6_31263749_31277092	0/0	t0001	441	78	5	9	59	1	4	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	t0002	441	74	14	13	38	1	8	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/1	t0003	440	72	7	12	34	3	15	copy fasta	HLA-C	chr6	31263749	31277092