JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HLA-C_chr6_31263749_31277092	0/0	t0004	442	53	5	11	30	2	5	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	t0005	440	40	3	12	20	2	3	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	t0006	441	30	3	0	25	1	1	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	t0007	440	24	14	5	0	3	2	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	t0008	436	19	14	5	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	t0009	442	18	7	7	0	2	2	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	t0010	442	10	10	0	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	t0011	442	9	4	0	0	0	5	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	t0012	441	6	1	2	0	2	1	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	t0013	442	5	2	0	2	1	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	t0014	441	3	3	0	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	t0015	441	3	0	0	3	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	t0016	441	2	2	0	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	t0017	442	1	0	0	1	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	t0018	441	1	0	1	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	t0019	441	1	0	1	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-DMA_chr6_32943618_32958097	0/0	t0001	311	381	75	74	175	15	42	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	t0002	308	48	3	7	35	2	1	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	t0003	311	7	2	3	0	1	1	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	t0004	311	7	5	2	0	0	0	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	t0005	311	1	0	0	1	0	0	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	t0006	308	1	0	0	1	0	0	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	t0007	311	1	1	0	0	0	0	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMB_chr6_32929636_32946028	0/1	t0001	557	372	72	65	184	14	36	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	t0002	557	62	13	21	20	1	7	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	t0003	557	6	0	0	5	0	1	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	t0004	557	3	2	1	0	0	0	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	t0005	557	3	0	0	2	0	1	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	t0006	557	3	0	0	3	0	0	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	t0007	557	2	1	1	0	0	0	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	t0008	557	1	0	0	0	0	1	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	t0009	557	1	0	0	0	1	0	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DOA_chr6_32999182_33014591	0/0	t0001	2712	73	3	7	59	1	3	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0002	2711	67	1	9	45	5	7	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0003	2711	30	1	15	9	1	4	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/1	t0004	2712	28	3	13	7	2	2	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0005	2712	24	0	1	23	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0006	2712	17	0	3	11	1	2	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0007	2712	10	6	2	0	2	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0008	2712	10	0	1	7	0	2	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0009	2712	9	5	2	0	2	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0010	2712	9	8	0	0	0	1	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0011	2712	8	1	2	1	0	4	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0012	2712	8	0	0	8	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0013	2711	7	0	0	7	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0014	2711	7	4	0	2	0	1	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0015	2711	7	7	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0016	2716	7	6	1	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0017	2711	6	5	0	0	0	1	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0018	2712	6	6	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591