JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HLA-DOA_chr6_32999182_33014591	0/0	t0019	2712	5	0	2	0	0	3	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0020	2711	5	2	1	1	1	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0021	2712	5	5	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0022	2712	4	0	0	4	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0023	2712	4	0	3	0	1	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0024	2711	4	0	0	4	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0025	2712	4	0	0	3	0	1	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0026	2711	4	0	0	4	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0027	2711	3	2	1	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0028	2712	3	2	1	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0029	2711	3	0	0	3	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0030	2712	3	0	0	0	0	3	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0031	2711	3	0	0	3	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0032	2712	2	0	2	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0033	2712	2	2	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0034	2712	2	0	0	1	1	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0035	2712	2	0	1	0	1	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0036	2712	2	0	0	2	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0037	2712	2	0	0	0	0	2	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0038	2711	2	0	0	2	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0039	2712	2	0	0	2	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0040	2712	2	0	0	0	0	2	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0041	2712	2	0	0	1	0	1	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0042	2711	2	0	1	1	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0043	2711	2	0	0	2	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0044	2711	2	2	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0045	2711	2	2	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0046	2711	2	0	2	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0047	2711	2	0	2	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0048	2712	2	2	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0049	2712	2	2	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0050	2712	2	0	0	2	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0051	2712	2	2	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0052	2712	1	1	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0053	2712	1	0	0	1	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0054	2712	1	0	0	1	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0055	2712	1	0	0	0	0	1	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0056	2712	1	1	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0057	2712	1	0	0	1	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0058	2712	1	1	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0059	2712	1	0	0	1	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0060	2712	1	1	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0061	2712	1	0	0	0	0	1	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0062	2712	1	0	0	1	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0063	2712	1	0	1	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0064	2712	1	0	0	1	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0065	2712	1	0	1	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0066	2712	1	0	0	1	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0067	2712	1	0	0	0	0	1	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0068	2711	1	0	1	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591