JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HLA-DOA_chr6_32999182_33014591	0/0	t0069	2711	1	0	0	0	0	1	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0070	2711	1	0	1	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0071	2711	1	0	0	1	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0072	2711	1	0	0	0	0	1	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0073	2711	1	1	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0074	2711	1	1	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0075	2711	1	0	0	0	0	1	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0076	2712	1	0	1	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0077	2712	1	0	1	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0078	2712	1	1	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0079	2712	1	0	0	0	0	1	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0080	2712	1	1	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0081	2712	1	1	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0082	2712	1	1	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0083	2712	1	1	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0084	2712	1	1	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0085	2712	1	0	0	0	0	1	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0086	2712	1	0	0	0	0	1	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0087	2712	1	1	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0088	2712	1	1	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0089	2712	1	1	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0090	2712	1	0	1	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0091	2712	1	0	0	1	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0092	2716	1	1	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0093	2712	1	0	0	1	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0094	2712	1	0	0	0	0	1	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0095	2712	1	0	1	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0096	2711	1	1	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0097	2712	1	0	1	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0098	2712	1	0	0	0	0	1	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	t0099	2712	1	0	1	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOB_chr6_32807763_32822002	0/0	t0001	505	157	33	36	70	7	11	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	t0002	505	139	14	27	73	2	23	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	t0003	505	54	5	9	31	3	6	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/1	t0004	505	43	19	7	14	2	0	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	t0005	505	28	15	2	10	1	0	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	t0006	504	28	0	0	22	0	6	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	t0007	505	8	0	4	2	2	0	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	t0008	505	1	0	0	0	1	0	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	t0009	505	1	0	1	0	0	0	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DPA1_chr6_33059569_33078649	0/1	t0001	871	51	3	26	9	7	5	copy fasta	HLA-DPA1	chr6	33059569	33078649
HLA-DPA1_chr6_33059569_33078649	0/0	t0002	871	26	1	10	9	2	4	copy fasta	HLA-DPA1	chr6	33059569	33078649
HLA-DPA1_chr6_33059569_33078649	0/0	t0003	882	11	8	3	0	0	0	copy fasta	HLA-DPA1	chr6	33059569	33078649
HLA-DPA1_chr6_33059569_33078649	0/0	t0004	871	6	0	0	6	0	0	copy fasta	HLA-DPA1	chr6	33059569	33078649
HLA-DPA1_chr6_33059569_33078649	0/0	t0005	871	4	4	0	0	0	0	copy fasta	HLA-DPA1	chr6	33059569	33078649
HLA-DPA1_chr6_33059569_33078649	0/0	t0006	871	2	1	1	0	0	0	copy fasta	HLA-DPA1	chr6	33059569	33078649
HLA-DPA1_chr6_33059569_33078649	0/0	t0007	871	2	1	0	0	0	1	copy fasta	HLA-DPA1	chr6	33059569	33078649
HLA-DPA1_chr6_33059569_33078649	0/0	t0008	871	1	0	0	0	1	0	copy fasta	HLA-DPA1	chr6	33059569	33078649
HLA-DPA1_chr6_33059569_33078649	0/0	t0009	871	1	0	0	0	0	1	copy fasta	HLA-DPA1	chr6	33059569	33078649
HLA-DPA1_chr6_33059569_33078649	0/0	t0010	871	1	0	0	0	0	1	copy fasta	HLA-DPA1	chr6	33059569	33078649