JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HLA-DPB1_chr6_33070990_33094696	0/0	t0001	3215	148	25	38	68	4	13	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0002	3206	79	1	3	74	0	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0003	3203	56	1	8	35	3	9	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/1	t0004	3215	42	4	14	3	7	13	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0005	3214	26	22	2	0	2	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0006	3206	26	5	8	6	2	5	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0007	3214	16	15	1	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0008	3203	9	2	0	4	0	3	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0009	3215	7	7	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0010	3211	6	0	0	6	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0011	3206	4	0	0	4	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0012	3206	3	3	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0013	3203	3	0	0	3	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0014	3206	2	0	0	2	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0015	3214	2	2	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0016	3211	2	0	0	0	0	2	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0017	3214	2	1	1	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0018	3206	2	2	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0019	3206	2	0	0	2	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0020	3206	2	0	0	2	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0021	3210	1	0	0	0	0	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0022	3215	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0023	3214	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0024	3214	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0025	3206	1	0	0	1	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0026	3207	1	0	0	1	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0027	3203	1	0	1	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0028	3203	1	0	0	0	0	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0029	3203	1	0	1	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0030	3215	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0031	3215	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0032	3215	1	0	0	1	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0033	3215	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0034	3215	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0035	3215	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	t0036	3215	1	0	1	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DQA1_chr6_32632406_32648684	1/0	t0001	807	30	12	4	7	1	5	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA1_chr6_32632406_32648684	0/0	t0002	807	25	3	4	14	0	4	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA1_chr6_32632406_32648684	0/0	t0003	807	16	3	1	10	1	1	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA1_chr6_32632406_32648684	0/0	t0004	807	14	2	3	9	0	0	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA1_chr6_32632406_32648684	0/1	t0005	807	1	0	0	0	0	0	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA2_chr6_32736391_32752198	0/1	t0001	691	140	10	24	86	5	14	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0002	692	73	17	15	35	3	3	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0003	692	49	2	3	33	0	11	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0004	692	35	13	11	8	2	1	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0005	694	30	0	0	24	0	6	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0006	693	24	1	2	21	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0007	693	16	14	2	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0008	704	15	13	2	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0009	704	15	2	11	0	2	0	copy fasta	HLA-DQA2	chr6	32736391	32752198