JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HLA-DQA2_chr6_32736391_32752198	0/0	t0010	694	15	0	5	4	2	4	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0011	693	13	4	2	2	1	4	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0012	703	7	4	3	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0013	693	5	1	0	4	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0014	705	4	4	0	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0015	691	3	3	0	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0016	705	3	1	1	0	1	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0017	706	1	1	0	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0018	692	1	1	0	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0019	692	1	1	0	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0020	694	1	1	0	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0021	694	1	0	0	0	0	1	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0022	693	1	0	0	1	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0023	690	1	0	1	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	t0024	692	1	1	0	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQB1_chr6_32654467_32671657	0/0	t0001	821	62	5	15	39	0	3	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/1	t0002	820	62	19	11	25	5	1	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	t0003	820	45	0	0	36	0	9	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	t0004	820	41	13	8	16	2	2	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	1/0	t0005	820	40	15	6	15	2	1	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	t0006	820	38	0	9	29	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	t0007	820	27	5	2	18	1	1	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	t0008	818	20	4	9	1	3	3	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	t0009	820	16	1	1	10	0	4	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	t0010	821	13	3	4	5	0	1	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	t0011	821	11	1	0	6	0	4	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	t0012	820	8	0	2	1	1	4	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	t0013	820	7	0	5	1	0	1	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	t0014	820	6	0	0	6	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	t0015	820	3	3	0	0	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	t0016	831	1	0	0	1	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	t0017	821	1	0	0	1	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	t0018	820	1	1	0	0	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB2_chr6_32751098_32768532	0/1	t0001	418	207	33	27	122	2	22	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	t0002	418	140	29	25	69	5	12	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	t0003	418	41	24	15	0	2	0	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	t0004	418	35	2	8	16	3	6	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	t0005	418	19	0	3	11	3	2	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	t0006	418	7	0	2	1	0	4	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	t0007	418	2	2	0	0	0	0	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	t0008	418	2	2	0	0	0	0	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	t0009	418	1	0	0	0	1	0	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	t0010	418	1	0	0	1	0	0	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DRA_chr6_32434887_32450046	0/1	t0001	471	177	33	46	75	5	17	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRA_chr6_32434887_32450046	0/0	t0002	471	77	17	12	44	4	0	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRA_chr6_32434887_32450046	0/0	t0003	471	64	12	6	35	1	10	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRA_chr6_32434887_32450046	0/0	t0004	471	50	5	1	37	1	6	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRA_chr6_32434887_32450046	0/0	t0005	471	44	16	9	15	2	2	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRA_chr6_32434887_32450046	0/0	t0006	471	43	6	8	18	3	8	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRA_chr6_32434887_32450046	0/0	t0007	471	2	2	0	0	0	0	copy fasta	HLA-DRA	chr6	32434887	32450046