JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HLCS_chr21_36743626_36971669	0/0	t0009	5650	5	0	4	0	1	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0010	5647	5	2	0	3	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0011	5652	5	0	0	5	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0012	5649	4	2	1	0	0	1	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0013	5655	4	2	0	2	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0014	5652	4	0	3	1	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0015	5651	4	4	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0016	5655	4	0	0	3	0	1	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0017	5654	3	3	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0018	5657	3	2	1	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0019	5654	3	2	1	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0020	5650	3	0	0	3	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0021	5651	3	0	1	2	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0022	5651	2	2	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0023	5649	2	2	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0024	5655	2	2	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0025	5653	2	2	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0026	5649	2	0	2	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0027	5652	2	1	0	1	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0028	5652	2	2	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0029	5649	2	2	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0030	5649	2	1	1	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0031	5653	2	2	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0032	5649	2	2	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0033	5656	2	2	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0034	5653	2	0	1	0	0	1	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0035	5654	2	0	0	2	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0036	5652	2	0	0	1	1	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0037	5651	2	1	0	0	1	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0038	5651	2	2	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0039	5655	2	0	0	2	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0040	5651	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0041	5651	1	0	1	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0042	5654	1	0	1	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0043	5649	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0044	5649	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0045	5652	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0046	5653	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0047	5653	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0048	5652	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0049	5652	1	0	0	1	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0050	5654	1	0	1	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0051	5655	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0052	5656	1	0	0	0	0	1	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0053	5651	1	0	0	0	0	1	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0054	5653	1	0	0	1	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0055	5647	1	0	0	0	0	1	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0056	5654	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0057	5652	1	0	0	1	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0058	5652	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669