JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HLCS_chr21_36743626_36971669	0/0	t0109	5651	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0110	5647	1	0	0	1	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0111	5652	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	t0112	5621	1	0	1	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLF_chr17_55259960_55330187	0/0	t0001	4838	156	25	32	68	6	25	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0002	4837	59	11	6	39	2	1	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	1/0	t0003	4834	45	6	12	26	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/1	t0004	4844	22	0	7	6	1	7	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0005	4833	16	4	1	8	2	1	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0006	4840	7	0	0	6	0	1	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0007	4840	7	1	3	1	2	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0008	4848	5	4	1	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0009	4838	5	5	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0010	4838	4	0	2	0	0	2	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0011	4842	4	4	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0012	4838	4	4	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0013	4841	3	0	1	0	0	2	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0014	4846	3	3	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0015	4844	3	0	2	0	1	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0016	4840	2	2	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0017	4834	2	2	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0018	4837	2	0	2	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0019	4838	2	1	0	1	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0020	4842	2	2	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0021	4840	2	0	0	1	0	1	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0022	4838	2	2	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0023	4838	2	2	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0024	4838	2	2	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0025	4834	2	0	2	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0026	4833	2	0	0	2	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0027	4837	2	0	0	2	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0028	4838	1	0	0	0	0	1	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0029	4838	1	0	0	1	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0030	4840	1	0	1	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0031	4840	1	0	1	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0032	4834	1	0	0	1	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0033	4833	1	0	0	0	1	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0034	4835	1	0	0	1	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0035	4839	1	0	1	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0036	4834	1	0	0	1	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0037	4836	1	0	0	0	0	1	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0038	4838	1	1	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0039	4840	1	1	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0040	4842	1	1	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0041	4842	1	1	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0042	4844	1	1	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0043	4834	1	0	0	0	0	1	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0044	4836	1	1	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0045	4834	1	0	0	1	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0046	4834	1	0	0	1	0	0	copy fasta	HLF	chr17	55259960	55330187