JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HLF_chr17_55259960_55330187	0/0	t0047	4838	1	1	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0048	4834	1	1	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0049	4834	1	0	0	1	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0050	4834	1	1	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0051	4833	1	0	0	1	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0052	4834	1	0	0	1	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0053	4838	1	0	0	0	0	1	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0054	4840	1	1	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0055	4844	1	1	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0056	4837	1	0	1	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0057	4837	1	0	0	0	1	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0058	4838	1	1	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0059	4850	1	0	1	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0060	4844	1	1	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0061	4840	1	1	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0062	4838	1	0	0	1	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0063	4838	1	1	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0064	4844	1	1	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0065	4837	1	0	0	0	0	1	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0066	4841	1	0	0	0	0	1	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0067	4838	1	0	0	1	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	t0068	4838	1	0	0	1	0	0	copy fasta	HLF	chr17	55259960	55330187
HLTF_chr3_149025127_149091533	0/0	t0001	2291	134	24	16	76	7	11	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	1/1	t0002	2291	118	25	17	46	6	22	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0003	2294	94	1	26	56	3	8	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0004	2291	16	13	2	0	1	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0005	2291	8	8	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0006	2291	6	6	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0007	2292	4	4	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0008	2291	3	3	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0009	2291	3	0	1	0	1	1	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0010	2295	3	2	1	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0011	2289	2	2	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0012	2294	2	0	0	2	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0013	2294	2	0	0	2	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0014	2291	2	0	0	2	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0015	2289	1	1	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0016	2291	1	0	0	0	0	1	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0017	2291	1	1	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0018	2291	1	0	1	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0019	2291	1	1	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0020	2291	1	1	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	t0021	2294	1	0	0	0	0	1	copy fasta	HLTF	chr3	149025127	149091533
HLX_chr1_220874443_220890059	0/0	t0001	770	168	29	21	97	4	17	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	1/1	t0002	771	115	14	25	56	4	14	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	t0003	769	47	1	16	23	2	5	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	t0004	770	33	19	10	0	4	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	t0005	770	32	15	1	14	0	2	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	t0006	770	15	0	2	12	0	1	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	t0007	770	11	11	0	0	0	0	copy fasta	HLX	chr1	220874443	220890059