JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HLX_chr1_220874443_220890059	0/0	t0008	771	3	0	2	1	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	t0009	770	2	0	0	0	0	2	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	t0010	770	2	2	0	0	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	t0011	771	1	0	0	1	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	t0012	769	1	1	0	0	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	t0013	769	1	0	1	0	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	t0014	769	1	0	0	1	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	t0015	770	1	0	0	0	0	1	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	t0016	770	1	1	0	0	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	t0017	771	1	0	0	1	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	t0018	771	1	0	0	1	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	t0019	770	1	0	0	1	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	t0020	770	1	1	0	0	0	0	copy fasta	HLX	chr1	220874443	220890059
HM13_chr20_31509442_31574543	1/1	t0001	435	109	15	32	45	7	8	copy fasta	HM13	chr20	31509442	31574543
HM13_chr20_31509442_31574543	0/0	t0002	435	73	48	20	0	3	2	copy fasta	HM13	chr20	31509442	31574543
HM13_chr20_31509442_31574543	0/0	t0003	435	8	7	1	0	0	0	copy fasta	HM13	chr20	31509442	31574543
HM13_chr20_31509442_31574543	0/0	t0004	435	2	2	0	0	0	0	copy fasta	HM13	chr20	31509442	31574543
HM13_chr20_31509442_31574543	0/0	t0005	435	2	0	0	0	0	2	copy fasta	HM13	chr20	31509442	31574543
HM13_chr20_31509442_31574543	0/0	t0006	435	2	2	0	0	0	0	copy fasta	HM13	chr20	31509442	31574543
HM13_chr20_31509442_31574543	0/0	t0007	435	2	2	0	0	0	0	copy fasta	HM13	chr20	31509442	31574543
HM13_chr20_31509442_31574543	0/0	t0008	435	1	0	1	0	0	0	copy fasta	HM13	chr20	31509442	31574543
HM13_chr20_31509442_31574543	0/0	t0009	435	1	0	0	1	0	0	copy fasta	HM13	chr20	31509442	31574543
HM13_chr20_31509442_31574543	0/0	t0010	435	1	1	0	0	0	0	copy fasta	HM13	chr20	31509442	31574543
HM13_chr20_31509442_31574543	0/0	t0011	435	1	1	0	0	0	0	copy fasta	HM13	chr20	31509442	31574543
HMBOX1_chr8_28885395_29058262	0/1	t0001	2448	77	18	14	32	5	7	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	1/0	t0002	2449	76	2	9	55	0	9	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0003	2454	60	17	4	32	0	7	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0004	2445	50	16	16	7	4	7	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0005	2449	16	11	1	0	3	1	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0006	2455	14	2	0	12	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0007	2445	12	11	1	0	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0008	2453	10	5	1	3	0	1	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0009	2454	5	0	0	5	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0010	2449	4	2	2	0	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0011	2450	3	0	0	3	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0012	2449	2	2	0	0	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0013	2445	2	0	0	2	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0014	2454	2	2	0	0	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0015	2452	2	0	2	0	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0016	2455	2	0	0	2	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0017	2449	1	0	0	1	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0018	2450	1	1	0	0	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0019	2448	1	0	0	1	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0020	2418	1	0	0	1	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0021	2454	1	1	0	0	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0022	2477	1	0	0	1	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	t0023	2454	1	0	0	1	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBS_chr11_119079881_119098549	1/1	t0001	420	234	86	53	65	8	20	copy fasta	HMBS	chr11	119079881	119098549
HMBS_chr11_119079881_119098549	0/0	t0002	420	206	11	27	137	6	25	copy fasta	HMBS	chr11	119079881	119098549
HMBS_chr11_119079881_119098549	0/0	t0003	420	1	1	0	0	0	0	copy fasta	HMBS	chr11	119079881	119098549