JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HMBS_chr11_119079881_119098549	0/0	t0004	420	1	0	0	0	0	1	copy fasta	HMBS	chr11	119079881	119098549
HMBS_chr11_119079881_119098549	0/0	t0005	420	1	0	0	1	0	0	copy fasta	HMBS	chr11	119079881	119098549
HMBS_chr11_119079881_119098549	0/0	t0006	402	1	0	0	1	0	0	copy fasta	HMBS	chr11	119079881	119098549
HMCES_chr3_129273870_129311186	1/1	t0001	1421	225	29	54	104	6	30	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	t0002	1421	75	33	9	23	2	8	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	t0003	1416	17	11	6	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	t0004	1421	5	4	1	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	t0005	1421	4	0	0	4	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	t0006	1421	2	2	0	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	t0007	1421	2	2	0	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	t0008	1421	2	1	1	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	t0009	1421	1	1	0	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	t0010	1421	1	0	1	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	t0011	1407	1	0	0	1	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	t0012	1421	1	1	0	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	t0013	1421	1	1	0	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	t0014	1421	1	0	1	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	t0015	1416	1	1	0	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	t0016	1421	1	0	1	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCN1_chr1_185729391_186195949	0/1	t0001	1461	59	32	13	5	2	6	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	t0002	1461	19	14	2	1	0	2	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	t0003	1462	6	4	2	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	t0004	1461	2	2	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	t0005	1461	2	0	1	0	1	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	t0006	1457	2	2	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	1/0	t0007	1461	1	0	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	t0008	1461	1	0	0	0	1	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN2_chr9_130260760_130439123	0/0	t0001	550	151	55	19	60	3	14	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	1/1	t0002	550	103	31	35	8	9	18	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	t0003	550	2	0	1	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	t0004	550	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	t0005	550	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMG20A_chr15_77415888_77490603	1/0	t0001	2762	123	18	19	63	5	17	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/1	t0002	2762	96	3	21	54	4	13	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0003	2762	92	20	21	41	3	7	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0004	2762	13	6	3	1	1	2	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0005	2762	6	6	0	0	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0006	2762	4	4	0	0	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0007	2761	3	3	0	0	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0008	2762	3	2	0	0	1	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0009	2762	2	0	2	0	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0010	2762	2	1	1	0	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0011	2752	2	2	0	0	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0012	2762	2	0	0	2	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0013	2761	2	2	0	0	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0014	2762	2	2	0	0	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0015	2762	1	0	0	0	0	1	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0016	2762	1	1	0	0	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0017	2752	1	0	0	1	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0018	2762	1	0	0	1	0	0	copy fasta	HMG20A	chr15	77415888	77490603