JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HMG20A_chr15_77415888_77490603	0/0	t0019	2750	1	1	0	0	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0020	2762	1	0	0	1	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0021	2762	1	0	1	0	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0022	2762	1	0	0	1	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0023	2762	1	1	0	0	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0024	2762	1	0	0	1	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0025	2762	1	0	1	0	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0026	2762	1	1	0	0	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0027	2762	1	0	1	0	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20A_chr15_77415888_77490603	0/0	t0028	2762	1	1	0	0	0	0	copy fasta	HMG20A	chr15	77415888	77490603
HMG20B_chr19_3567944_3584083	1/1	t0001	632	342	81	63	154	11	31	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	t0002	632	21	0	3	9	1	8	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	t0003	632	18	1	13	0	4	0	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	t0004	632	18	9	1	0	0	8	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	t0005	621	2	2	0	0	0	0	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	t0006	632	1	0	1	0	0	0	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	t0007	632	1	0	0	0	0	1	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	t0008	632	1	0	0	1	0	0	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	t0009	632	1	1	0	0	0	0	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	t0010	632	1	0	1	0	0	0	copy fasta	HMG20B	chr19	3567944	3584083
HMGA1_chr6_34231873_34251231	0/1	t0001	1597	273	79	61	93	10	29	copy fasta	HMGA1	chr6	34231873	34251231
HMGA1_chr6_34231873_34251231	0/0	t0002	1597	14	1	0	13	0	0	copy fasta	HMGA1	chr6	34231873	34251231
HMGA1_chr6_34231873_34251231	1/0	t0003	1597	8	6	1	0	0	0	copy fasta	HMGA1	chr6	34231873	34251231
HMGA1_chr6_34231873_34251231	0/0	t0004	1597	6	0	0	6	0	0	copy fasta	HMGA1	chr6	34231873	34251231
HMGA1_chr6_34231873_34251231	0/0	t0005	1597	5	0	1	0	4	0	copy fasta	HMGA1	chr6	34231873	34251231
HMGA1_chr6_34231873_34251231	0/0	t0006	1597	3	3	0	0	0	0	copy fasta	HMGA1	chr6	34231873	34251231
HMGA1_chr6_34231873_34251231	0/0	t0007	1597	2	0	0	1	0	1	copy fasta	HMGA1	chr6	34231873	34251231
HMGA1_chr6_34231873_34251231	0/0	t0008	1597	2	0	2	0	0	0	copy fasta	HMGA1	chr6	34231873	34251231
HMGA1_chr6_34231873_34251231	0/0	t0009	1597	2	1	1	0	0	0	copy fasta	HMGA1	chr6	34231873	34251231
HMGA1_chr6_34231873_34251231	0/0	t0010	1597	2	2	0	0	0	0	copy fasta	HMGA1	chr6	34231873	34251231
HMGA1_chr6_34231873_34251231	0/0	t0011	1597	1	0	1	0	0	0	copy fasta	HMGA1	chr6	34231873	34251231
HMGA1_chr6_34231873_34251231	0/0	t0012	1597	1	0	0	1	0	0	copy fasta	HMGA1	chr6	34231873	34251231
HMGA1_chr6_34231873_34251231	0/0	t0013	1597	1	0	1	0	0	0	copy fasta	HMGA1	chr6	34231873	34251231
HMGA1_chr6_34231873_34251231	0/0	t0014	1597	1	0	0	0	0	1	copy fasta	HMGA1	chr6	34231873	34251231
HMGA1_chr6_34231873_34251231	0/0	t0015	1597	1	0	0	0	0	1	copy fasta	HMGA1	chr6	34231873	34251231
HMGA2_chr12_65819483_65971291	0/0	t0001	3784	13	0	1	8	0	4	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0002	3786	8	1	0	5	0	2	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0003	3790	7	4	2	0	1	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0004	3784	6	1	0	4	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0005	3785	6	1	0	4	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0006	3788	6	2	0	4	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0007	3788	5	0	3	2	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0008	3780	4	0	1	0	1	2	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0009	3794	4	1	0	3	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0010	3785	4	0	1	1	0	2	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0011	3786	4	2	0	2	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0012	3776	3	0	1	1	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0013	3778	3	0	0	2	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0014	3783	3	0	2	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0015	3780	3	0	0	2	1	0	copy fasta	HMGA2	chr12	65819483	65971291