JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HMGA2_chr12_65819483_65971291	0/0	t0016	3782	3	1	0	1	1	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0017	3788	3	1	0	2	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0018	3787	3	3	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0019	3791	3	0	2	0	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0020	3769	2	0	0	2	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0021	3772	2	2	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0022	3773	2	0	0	2	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0023	3772	2	0	0	2	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0024	3774	2	0	1	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0025	3775	2	2	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0026	3776	2	0	0	2	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0027	3779	2	0	0	2	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0028	3781	2	0	1	0	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0029	3778	2	1	0	0	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0030	3783	2	0	0	1	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0031	3782	2	0	0	2	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0032	3785	2	0	0	2	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0033	3784	2	0	0	2	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/1	t0034	3786	2	0	0	0	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0035	3785	2	1	0	0	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0036	3786	2	0	1	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0037	3789	2	0	0	2	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0038	3789	2	0	0	2	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0039	3791	2	0	2	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0040	3790	2	0	0	2	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0041	3795	2	0	0	2	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0042	3787	2	1	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0043	3789	2	1	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0044	3788	2	2	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0045	3789	2	2	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0046	3781	2	1	0	0	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0047	3787	2	2	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0048	3790	2	0	0	2	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0049	3789	2	1	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0050	3771	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0051	3765	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0052	3767	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0053	3764	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0054	3766	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0055	3765	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0056	3768	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0057	3770	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0058	3770	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0059	3775	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0060	3775	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0061	3774	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0062	3774	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0063	3779	1	0	0	0	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0064	3778	1	0	0	0	1	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0065	3776	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291