JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HMGA2_chr12_65819483_65971291	0/0	t0066	3778	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0067	3780	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0068	3779	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0069	3778	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0070	3781	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0071	3781	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0072	3783	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0073	3785	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0074	3786	1	0	0	0	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0075	3784	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0076	3783	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0077	3785	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0078	3786	1	0	0	0	1	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0079	3787	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0080	3788	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	1/0	t0081	3788	1	0	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0082	3788	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0083	3787	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0084	3786	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0085	3790	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0086	3790	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0087	3790	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0088	3793	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0089	3795	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0090	3792	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0091	3795	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0092	3795	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0093	3797	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0094	3800	1	0	0	0	1	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0095	3798	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0096	3802	1	0	0	0	1	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0097	3782	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0098	3787	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0099	3784	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0100	3788	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0101	3787	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0102	3793	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0103	3792	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0104	3783	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0105	3780	1	0	0	0	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0106	3782	1	0	0	0	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0107	3787	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0108	3786	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0109	3786	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0110	3786	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0111	3787	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0112	3788	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0113	3788	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0114	3789	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0115	3791	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291