JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HMGA2_chr12_65819483_65971291	0/0	t0116	3791	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0117	3792	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0118	3788	1	0	0	0	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0119	3793	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0120	3792	1	0	0	0	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0121	3792	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0122	3792	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0123	3792	1	0	0	0	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0124	3793	1	0	1	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0125	3796	1	0	0	0	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0126	3792	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0127	3794	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0128	3796	1	0	0	0	0	1	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0129	3796	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0130	3799	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0131	3800	1	1	0	0	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0132	3774	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0133	3790	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	t0134	3800	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGB1_chr13_30451704_30470936	0/0	t0001	4815	41	2	8	25	1	5	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0002	4816	39	0	18	15	1	5	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0003	4815	21	0	4	9	2	6	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0004	4817	15	4	6	5	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0005	4814	14	0	1	12	1	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0006	4814	12	0	2	6	0	4	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0007	4813	11	0	2	8	1	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0008	4820	10	0	5	3	0	2	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0009	4819	10	0	3	3	1	3	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0010	4818	7	1	1	5	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0011	4818	7	2	2	3	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0012	4810	6	5	1	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0013	4813	6	0	0	5	1	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0014	4813	5	0	4	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0015	4820	4	4	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0016	4816	4	0	0	4	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0017	4814	4	0	1	3	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0018	4818	4	3	1	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0019	4814	4	4	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0020	4814	4	0	2	0	0	2	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0021	4815	4	0	0	4	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0022	4810	4	0	0	3	0	1	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0023	4815	4	0	0	4	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/1	t0024	4816	4	0	2	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0025	4821	3	3	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0026	4820	3	3	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0027	4810	3	3	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0028	4810	3	3	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0029	4811	3	2	0	0	0	1	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0030	4817	3	0	0	3	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0031	4811	3	0	0	3	0	0	copy fasta	HMGB1	chr13	30451704	30470936