Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANK3_chr10_60021298_60394875	1/0	t0001	3886	38	13	4	19	0	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0002	3886	29	10	5	10	1	3	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0003	3886	14	0	7	6	0	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0004	3889	13	6	1	0	1	5	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0005	3886	8	2	2	3	1	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0006	3886	5	5	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0007	3885	5	3	0	2	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0008	3888	4	4	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0009	3886	3	0	0	1	0	2	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0010	3886	3	0	0	2	1	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0011	3890	3	0	1	2	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0012	3890	3	3	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0013	3889	3	1	0	0	1	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0014	3888	2	2	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0015	3883	2	2	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0016	3886	2	2	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0017	3887	2	0	1	1	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0018	3886	2	0	0	2	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0019	3886	2	2	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0020	3886	2	1	0	1	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0021	3888	2	2	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0022	3886	2	0	0	2	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0023	3887	2	1	0	1	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0024	3885	2	0	2	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0025	3889	2	0	0	0	1	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0026	3887	2	0	1	1	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0027	3885	2	0	0	0	1	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0028	3888	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0029	3890	1	0	0	0	0	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0030	3886	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0031	3887	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0032	3886	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0033	3889	1	0	0	0	0	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0034	3886	1	0	1	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0035	3889	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0036	3888	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0037	3887	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0038	3890	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0039	3890	1	0	0	1	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0040	3889	1	0	0	1	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0041	3886	1	0	0	1	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0042	3886	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0043	3887	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0044	3888	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0045	3886	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0046	3889	1	0	0	0	1	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0047	3888	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0048	3886	1	0	0	0	0	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0049	3886	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0050	3886	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875