JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HMGB1_chr13_30451704_30470936	0/0	t0032	4814	3	0	0	1	0	2	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	1/0	t0033	4809	2	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0034	4822	2	2	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0035	4820	2	1	1	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0036	4818	2	2	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0037	4815	2	0	0	2	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0038	4813	2	2	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0039	4818	2	2	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0040	4817	2	2	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0041	4819	2	1	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0042	4813	2	0	0	2	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0043	4813	2	2	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0044	4866	2	2	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0045	4821	2	0	0	1	0	1	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0046	4820	2	0	1	0	0	1	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0047	4817	2	0	2	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0048	4812	2	1	0	0	1	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0049	4810	2	1	0	0	0	1	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0050	4817	2	2	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0051	4813	2	0	0	2	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0052	4816	2	0	1	0	0	1	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0053	4824	1	0	1	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0054	4824	1	0	1	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0055	4817	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0056	4820	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0057	4818	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0058	4812	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0059	4821	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0060	4819	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0061	4813	1	0	1	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0062	4820	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0063	4817	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0064	4817	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0065	4816	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0066	4817	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0067	4815	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0068	4814	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0069	4872	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0070	4820	1	0	1	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0071	4815	1	0	0	0	0	1	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0072	4817	1	0	0	0	1	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0073	4815	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0074	4815	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0075	4866	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0076	4810	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0077	4815	1	0	0	0	1	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0078	4814	1	0	0	0	1	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0079	4814	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0080	4816	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0081	4815	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936