JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HMGB1_chr13_30451704_30470936	0/0	t0082	4815	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0083	4813	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0084	4825	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0085	4816	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0086	4812	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0087	4811	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0088	4810	1	0	0	0	0	1	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0089	4815	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0090	4815	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0091	4815	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0092	4815	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0093	4815	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0094	4811	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0095	4810	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0096	4815	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0097	4815	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0098	4826	1	0	1	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0099	4816	1	0	1	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0100	4815	1	0	1	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0101	4811	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0102	4815	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0103	4814	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0104	4819	1	0	0	0	0	1	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0105	4815	1	0	0	0	0	1	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0106	4813	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0107	4813	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0108	4819	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0109	4820	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0110	4819	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0111	4813	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0112	4817	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0113	4815	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0114	4816	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0115	4811	1	0	0	0	0	1	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0116	4814	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0117	4813	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0118	4812	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0119	4813	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0120	4814	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0121	4813	1	0	0	1	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0122	4815	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0123	4814	1	0	1	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0124	4817	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0125	4815	1	0	1	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0126	4815	1	0	1	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0127	4820	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	t0128	4819	1	1	0	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB2_chr4_173326376_173339358	0/1	t0001	814	205	23	51	92	10	28	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	1/0	t0002	812	51	22	3	19	2	4	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0003	812	23	1	2	17	0	3	copy fasta	HMGB2	chr4	173326376	173339358