JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HMGB2_chr4_173326376_173339358	0/0	t0004	812	22	11	0	11	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0005	813	11	8	2	0	0	1	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0006	802	11	11	0	0	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0007	816	10	1	5	0	1	3	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0008	813	7	3	1	3	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0009	820	4	3	0	0	1	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0010	813	3	1	2	0	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0011	818	3	0	2	1	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0012	812	3	3	0	0	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0013	812	2	1	0	0	0	1	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0014	814	1	0	0	1	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0015	816	1	0	0	1	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0016	811	1	1	0	0	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0017	811	1	1	0	0	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0018	811	1	1	0	0	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0019	824	1	1	0	0	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0020	846	1	0	0	0	0	1	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0021	826	1	1	0	0	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0022	850	1	1	0	0	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0023	856	1	1	0	0	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0024	816	1	0	0	0	0	1	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0025	812	1	0	0	1	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0026	828	1	1	0	0	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0027	807	1	1	0	0	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	t0028	812	1	1	0	0	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB3_chrX_150978335_150995771	0/1	t0001	2904	97	46	9	33	2	6	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0002	2903	80	15	5	45	1	14	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	1/0	t0003	2905	59	7	21	18	5	7	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0004	2904	48	1	15	27	3	2	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0005	2903	5	0	3	2	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0006	2899	5	0	0	5	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0007	2903	4	1	2	0	0	1	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0008	2903	3	3	0	0	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0009	2906	3	1	1	1	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0010	2904	2	0	0	2	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0011	2903	2	0	1	0	1	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0012	2904	2	2	0	0	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0013	2905	2	0	2	0	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0014	2897	1	0	0	1	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0015	2905	1	0	0	1	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0016	2904	1	0	1	0	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0017	2903	1	0	0	1	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0018	2903	1	0	0	1	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0019	2899	1	0	0	1	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0020	2902	1	0	1	0	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0021	2904	1	1	0	0	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0022	2902	1	0	0	0	1	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0023	2903	1	0	0	1	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0024	2904	1	1	0	0	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0025	2904	1	1	0	0	0	0	copy fasta	HMGB3	chrX	150978335	150995771