JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HMGB3_chrX_150978335_150995771	0/0	t0026	2904	1	1	0	0	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0027	2905	1	0	0	1	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0028	2905	1	1	0	0	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0029	2905	1	0	0	1	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0030	2905	1	1	0	0	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	t0031	2906	1	0	0	1	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB4_chr1_33859079_33869791	1/1	t0001	153	400	94	72	173	14	45	copy fasta	HMGB4	chr1	33859079	33869791
HMGB4_chr1_33859079_33869791	0/0	t0002	153	1	0	0	1	0	0	copy fasta	HMGB4	chr1	33859079	33869791
HMGB4_chr1_33859079_33869791	0/0	t0003	153	1	0	0	0	0	1	copy fasta	HMGB4	chr1	33859079	33869791
HMGCLL1_chr6_55429373_55584192	0/0	t0001	1426	189	35	29	88	8	29	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/1	t0002	1426	99	5	21	65	4	3	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	t0003	1427	9	8	1	0	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	t0004	1426	7	7	0	0	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	t0005	1428	5	5	0	0	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	t0006	1426	4	4	0	0	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	t0007	1427	3	2	1	0	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	1/0	t0008	1427	3	2	0	0	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	t0009	1427	3	3	0	0	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	t0010	1426	2	0	0	0	0	2	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	t0011	1426	2	0	1	0	0	1	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	t0012	1427	1	1	0	0	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	t0013	1426	1	0	0	1	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	t0014	1426	1	1	0	0	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	t0015	1426	1	0	1	0	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	t0016	1426	1	1	0	0	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	t0017	1426	1	0	1	0	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	t0018	1426	1	0	1	0	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	t0019	1426	1	0	0	0	0	1	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCL_chr1_23796885_23830429	0/1	t0001	593	315	77	55	139	15	28	copy fasta	HMGCL	chr1	23796885	23830429
HMGCL_chr1_23796885_23830429	1/0	t0002	593	55	6	15	26	1	6	copy fasta	HMGCL	chr1	23796885	23830429
HMGCL_chr1_23796885_23830429	0/0	t0003	593	1	0	0	1	0	0	copy fasta	HMGCL	chr1	23796885	23830429
HMGCL_chr1_23796885_23830429	0/0	t0004	593	1	1	0	0	0	0	copy fasta	HMGCL	chr1	23796885	23830429
HMGCR_chr5_75332220_75367101	1/1	t0001	1864	174	53	32	72	4	11	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	t0002	1864	112	9	18	66	2	17	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	t0003	1847	44	3	10	28	1	2	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	t0004	1864	22	6	8	5	1	2	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	t0005	1864	9	8	1	0	0	0	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	t0006	1864	7	0	0	6	0	1	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	t0007	1864	6	4	2	0	0	0	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	t0008	1864	6	5	1	0	0	0	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	t0009	1864	5	0	0	5	0	0	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	t0010	1864	1	0	0	0	0	1	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	t0011	1864	1	1	0	0	0	0	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	t0012	1864	1	0	0	1	0	0	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	t0013	1864	1	0	0	1	0	0	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	t0014	1864	1	1	0	0	0	0	copy fasta	HMGCR	chr5	75332220	75367101
HMGCS1_chr5_43282470_43318412	0/0	t0001	3788	111	19	30	38	5	19	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	1/1	t0002	3788	107	21	16	55	3	10	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0003	3788	19	15	1	0	0	3	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0004	3788	16	0	0	15	0	1	copy fasta	HMGCS1	chr5	43282470	43318412