JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HMGCS1_chr5_43282470_43318412	0/0	t0005	3788	15	11	4	0	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0006	3784	7	6	1	0	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0007	3788	7	6	1	0	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0008	3788	5	5	0	0	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0009	3788	3	3	0	0	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0010	3788	3	0	3	0	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0011	3788	3	0	3	0	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0012	3788	2	0	0	2	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0013	3788	2	2	0	0	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0014	3788	2	1	1	0	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0015	3788	2	2	0	0	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0016	3788	2	0	2	0	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0017	3788	1	0	0	1	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0018	3787	1	0	0	1	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0019	3788	1	1	0	0	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0020	3788	1	0	0	0	0	1	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0021	3788	1	0	1	0	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	t0022	3788	1	0	1	0	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS2_chr1_119743002_119773905	1/1	t0001	907	401	75	74	190	17	43	copy fasta	HMGCS2	chr1	119743002	119773905
HMGCS2_chr1_119743002_119773905	0/0	t0002	907	9	0	1	8	0	0	copy fasta	HMGCS2	chr1	119743002	119773905
HMGCS2_chr1_119743002_119773905	0/0	t0003	907	6	6	0	0	0	0	copy fasta	HMGCS2	chr1	119743002	119773905
HMGCS2_chr1_119743002_119773905	0/0	t0004	907	5	5	0	0	0	0	copy fasta	HMGCS2	chr1	119743002	119773905
HMGCS2_chr1_119743002_119773905	0/0	t0005	901	4	2	2	0	0	0	copy fasta	HMGCS2	chr1	119743002	119773905
HMGCS2_chr1_119743002_119773905	0/0	t0006	907	4	4	0	0	0	0	copy fasta	HMGCS2	chr1	119743002	119773905
HMGCS2_chr1_119743002_119773905	0/0	t0007	907	2	0	0	1	0	1	copy fasta	HMGCS2	chr1	119743002	119773905
HMGCS2_chr1_119743002_119773905	0/0	t0008	907	2	0	1	0	1	0	copy fasta	HMGCS2	chr1	119743002	119773905
HMGCS2_chr1_119743002_119773905	0/0	t0009	907	1	0	0	1	0	0	copy fasta	HMGCS2	chr1	119743002	119773905
HMGN1_chr21_39337315_39354088	0/0	t0001	970	158	19	35	72	11	21	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	1/0	t0002	969	95	0	14	65	3	12	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0003	973	40	3	5	24	0	8	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/1	t0004	973	34	5	8	9	4	7	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0005	973	26	24	2	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0006	970	15	13	2	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0007	995	14	13	1	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0008	970	6	0	6	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0009	973	5	1	4	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0010	969	5	5	0	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0011	969	3	0	3	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0012	970	1	1	0	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0013	969	1	1	0	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0014	973	1	1	0	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0015	969	1	1	0	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0016	970	1	0	0	1	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0017	970	1	0	1	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0018	969	1	1	0	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0019	973	1	1	0	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0020	973	1	1	0	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0021	973	1	0	1	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0022	973	1	1	0	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	t0023	973	1	1	0	0	0	0	copy fasta	HMGN1	chr21	39337315	39354088