JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HMGN1_chr21_39337315_39354088	0/0	t0024	973	1	0	0	1	0	0	copy fasta	HMGN1	chr21	39337315	39354088
HMGN2_chr1_26467440_26481642	0/0	t0001	1668	229	45	37	115	5	27	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0002	1668	78	14	25	24	2	13	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/1	t0003	1668	27	8	9	1	7	1	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0004	1667	16	11	1	3	0	1	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0005	1667	5	0	2	2	0	1	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	1/0	t0006	1668	5	0	1	0	3	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0007	1667	4	4	0	0	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0008	1667	3	2	1	0	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0009	1667	3	2	0	1	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0010	1668	3	0	0	3	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0011	1668	2	2	0	0	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0012	1668	1	0	1	0	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0013	1668	1	0	0	1	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0014	1667	1	0	1	0	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0015	1667	1	1	0	0	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0016	1667	1	1	0	0	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0017	1668	1	1	0	0	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0018	1668	1	0	0	1	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0019	1668	1	0	0	1	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0020	1668	1	0	0	1	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0021	1668	1	0	1	0	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0022	1668	1	0	1	0	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0023	1668	1	0	0	0	1	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0024	1668	1	0	0	0	0	1	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0025	1668	1	1	0	0	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN2_chr1_26467440_26481642	0/0	t0026	1668	1	0	0	1	0	0	copy fasta	HMGN2	chr1	26467440	26481642
HMGN3_chr6_79196245_79239682	0/1	t0001	566	276	60	61	111	12	31	copy fasta	HMGN3	chr6	79196245	79239682
HMGN3_chr6_79196245_79239682	1/0	t0002	566	19	18	0	0	0	0	copy fasta	HMGN3	chr6	79196245	79239682
HMGN3_chr6_79196245_79239682	0/0	t0003	566	15	8	3	0	0	4	copy fasta	HMGN3	chr6	79196245	79239682
HMGN3_chr6_79196245_79239682	0/0	t0004	566	4	4	0	0	0	0	copy fasta	HMGN3	chr6	79196245	79239682
HMGN3_chr6_79196245_79239682	0/0	t0005	566	3	1	0	0	0	2	copy fasta	HMGN3	chr6	79196245	79239682
HMGN3_chr6_79196245_79239682	0/0	t0006	566	1	1	0	0	0	0	copy fasta	HMGN3	chr6	79196245	79239682
HMGN3_chr6_79196245_79239682	0/0	t0007	566	1	1	0	0	0	0	copy fasta	HMGN3	chr6	79196245	79239682
HMGN3_chr6_79196245_79239682	0/0	t0008	566	1	1	0	0	0	0	copy fasta	HMGN3	chr6	79196245	79239682
HMGN3_chr6_79196245_79239682	0/0	t0009	566	1	0	0	1	0	0	copy fasta	HMGN3	chr6	79196245	79239682
HMGN3_chr6_79196245_79239682	0/0	t0010	566	1	0	0	0	0	1	copy fasta	HMGN3	chr6	79196245	79239682
HMGN4_chr6_26533366_26551933	0/1	t0001	1671	177	78	38	40	7	13	copy fasta	HMGN4	chr6	26533366	26551933
HMGN4_chr6_26533366_26551933	0/0	t0002	1671	137	5	23	83	7	19	copy fasta	HMGN4	chr6	26533366	26551933
HMGN4_chr6_26533366_26551933	0/0	t0003	1671	42	6	0	32	0	4	copy fasta	HMGN4	chr6	26533366	26551933
HMGN4_chr6_26533366_26551933	1/0	t0004	1671	22	4	4	11	1	1	copy fasta	HMGN4	chr6	26533366	26551933
HMGN4_chr6_26533366_26551933	0/0	t0005	1671	6	0	6	0	0	0	copy fasta	HMGN4	chr6	26533366	26551933
HMGN4_chr6_26533366_26551933	0/0	t0006	1671	2	1	1	0	0	0	copy fasta	HMGN4	chr6	26533366	26551933
HMGN4_chr6_26533366_26551933	0/0	t0007	1671	2	0	0	0	0	2	copy fasta	HMGN4	chr6	26533366	26551933
HMGN4_chr6_26533366_26551933	0/0	t0008	1671	1	0	0	0	0	1	copy fasta	HMGN4	chr6	26533366	26551933
HMGN4_chr6_26533366_26551933	0/0	t0009	1671	1	0	0	1	0	0	copy fasta	HMGN4	chr6	26533366	26551933
HMGN4_chr6_26533366_26551933	0/0	t0010	1671	1	0	0	0	1	0	copy fasta	HMGN4	chr6	26533366	26551933
HMGN4_chr6_26533366_26551933	0/0	t0011	1671	1	0	0	1	0	0	copy fasta	HMGN4	chr6	26533366	26551933
HMGN4_chr6_26533366_26551933	0/0	t0012	1671	1	0	1	0	0	0	copy fasta	HMGN4	chr6	26533366	26551933
HMGN4_chr6_26533366_26551933	0/0	t0013	1671	1	0	0	1	0	0	copy fasta	HMGN4	chr6	26533366	26551933