JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HMGN4_chr6_26533366_26551933	0/0	t0014	1671	1	0	1	0	0	0	copy fasta	HMGN4	chr6	26533366	26551933
HMGN4_chr6_26533366_26551933	0/0	t0015	1671	1	0	0	1	0	0	copy fasta	HMGN4	chr6	26533366	26551933
HMGN5_chrX_81108699_81206913	1/1	t0001	1251	213	63	33	86	7	22	copy fasta	HMGN5	chrX	81108699	81206913
HMGN5_chrX_81108699_81206913	0/0	t0002	1250	4	3	1	0	0	0	copy fasta	HMGN5	chrX	81108699	81206913
HMGN5_chrX_81108699_81206913	0/0	t0003	1250	4	0	1	3	0	0	copy fasta	HMGN5	chrX	81108699	81206913
HMGN5_chrX_81108699_81206913	0/0	t0004	1251	2	0	2	0	0	0	copy fasta	HMGN5	chrX	81108699	81206913
HMGN5_chrX_81108699_81206913	0/0	t0005	1252	1	0	0	1	0	0	copy fasta	HMGN5	chrX	81108699	81206913
HMGN5_chrX_81108699_81206913	0/0	t0006	1251	1	0	0	1	0	0	copy fasta	HMGN5	chrX	81108699	81206913
HMGXB3_chr5_149995739_150058128	0/0	t0001	1380	104	27	9	58	0	10	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	1/0	t0002	1380	88	0	21	47	3	16	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/1	t0003	1380	52	7	12	16	4	12	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0004	1380	41	8	11	22	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0005	1380	37	29	3	3	0	2	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0006	1380	9	8	0	0	0	1	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0007	1380	6	0	4	0	2	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0008	1380	6	6	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0009	1380	5	2	3	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0010	1380	5	0	0	5	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0011	1380	4	4	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0012	1380	2	0	1	1	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0013	1380	2	1	1	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0014	1380	2	0	0	2	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0015	1380	2	1	0	0	1	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0016	1380	1	0	0	1	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0017	1380	1	0	1	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0018	1380	1	0	0	0	0	1	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0019	1380	1	1	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0020	1380	1	1	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0021	1380	1	1	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0022	1380	1	0	1	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0023	1380	1	0	0	0	0	1	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0024	1380	1	0	1	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0025	1380	1	0	0	0	0	1	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0026	1380	1	0	1	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0027	1380	1	0	1	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0028	1380	1	1	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0029	1380	1	0	0	1	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	t0030	1380	1	1	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB4_chr22_35252493_35300807	1/0	t0001	2290	142	50	21	56	5	9	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/1	t0002	2289	121	11	25	58	5	21	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/0	t0003	2285	42	0	0	39	0	3	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/0	t0004	2290	10	8	2	0	0	0	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/0	t0005	2289	7	0	0	7	0	0	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/0	t0006	2290	4	2	2	0	0	0	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/0	t0007	2290	4	0	1	0	0	3	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/0	t0008	2290	2	0	0	2	0	0	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/0	t0009	2290	1	1	0	0	0	0	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/0	t0010	2289	1	1	0	0	0	0	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/0	t0011	2289	1	0	0	1	0	0	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/0	t0012	2289	1	0	0	1	0	0	copy fasta	HMGXB4	chr22	35252493	35300807