JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HMGXB4_chr22_35252493_35300807	0/0	t0013	2289	1	0	0	1	0	0	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/0	t0014	2289	1	0	0	0	0	1	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/0	t0015	2289	1	0	0	0	0	1	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/0	t0016	2289	1	0	1	0	0	0	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/0	t0017	2289	1	0	0	1	0	0	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/0	t0018	2290	1	1	0	0	0	0	copy fasta	HMGXB4	chr22	35252493	35300807
HMHB1_chr5_143807161_143825716	1/1	t0001	256	452	94	82	219	12	43	copy fasta	HMHB1	chr5	143807161	143825716
HMHB1_chr5_143807161_143825716	0/0	t0002	256	2	2	0	0	0	0	copy fasta	HMHB1	chr5	143807161	143825716
HMHB1_chr5_143807161_143825716	0/0	t0003	256	1	0	0	1	0	0	copy fasta	HMHB1	chr5	143807161	143825716
HMHB1_chr5_143807161_143825716	0/0	t0004	256	1	1	0	0	0	0	copy fasta	HMHB1	chr5	143807161	143825716
HMHB1_chr5_143807161_143825716	0/0	t0005	256	1	1	0	0	0	0	copy fasta	HMHB1	chr5	143807161	143825716
HMHB1_chr5_143807161_143825716	0/0	t0006	256	1	0	0	0	0	1	copy fasta	HMHB1	chr5	143807161	143825716
HMMR_chr5_163455632_163496941	1/1	t0001	839	263	69	50	113	7	22	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	t0002	839	92	2	18	47	5	20	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	t0003	839	20	1	2	15	0	2	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	t0004	839	14	11	3	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	t0005	839	5	5	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	t0006	839	5	3	2	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	t0007	839	2	2	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	t0008	839	2	2	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	t0009	839	1	0	1	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	t0010	839	1	0	0	1	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	t0011	839	1	1	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMOX1_chr22_35376096_35399207	1/1	t0001	688	337	41	60	179	16	39	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	t0002	688	29	28	1	0	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	t0003	688	5	5	0	0	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	t0004	696	4	4	0	0	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	t0005	688	2	0	0	2	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	t0006	696	1	1	0	0	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	t0007	688	1	0	0	1	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	t0008	688	1	0	0	0	0	1	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	t0009	688	1	1	0	0	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	t0010	688	1	0	1	0	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	t0011	688	1	0	0	1	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	t0012	688	1	0	0	1	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX2_chr16_4471398_4515347	0/1	t0001	723	195	74	28	69	3	20	copy fasta	HMOX2	chr16	4471398	4515347
HMOX2_chr16_4471398_4515347	0/0	t0002	723	111	11	22	59	1	18	copy fasta	HMOX2	chr16	4471398	4515347
HMOX2_chr16_4471398_4515347	0/0	t0003	723	5	5	0	0	0	0	copy fasta	HMOX2	chr16	4471398	4515347
HMOX2_chr16_4471398_4515347	0/0	t0004	723	2	2	0	0	0	0	copy fasta	HMOX2	chr16	4471398	4515347
HMSD_chr18_63944301_63966835	1/0	t0001	1683	214	15	44	123	7	24	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/1	t0002	1686	116	34	16	50	3	12	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	t0003	1682	19	9	1	9	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	t0004	1681	10	9	1	0	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	t0005	1685	8	6	2	0	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	t0006	1686	6	6	0	0	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	t0007	1683	6	0	2	4	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	t0008	1687	4	1	2	0	1	0	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	t0009	1683	3	3	0	0	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	t0010	1683	3	0	2	0	1	0	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	t0011	1681	3	3	0	0	0	0	copy fasta	HMSD	chr18	63944301	63966835