JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HMSD_chr18_63944301_63966835	0/0	t0012	1686	2	2	0	0	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	t0013	1687	2	2	0	0	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	t0014	1687	2	2	0	0	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	t0015	1639	2	0	0	2	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	t0016	1683	1	0	0	1	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	t0017	1686	1	1	0	0	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	t0018	1683	1	0	0	1	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	t0019	1687	1	1	0	0	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMX1_chr4_8862048_8876839	0/0	t0001	871	177	7	38	113	4	15	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0002	871	94	9	25	40	10	10	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0003	871	73	37	13	14	4	5	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0004	871	30	4	5	7	0	14	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0005	876	16	10	2	2	0	2	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0006	876	14	14	0	0	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0007	871	3	3	0	0	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0008	876	2	2	0	0	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0009	871	2	1	0	1	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0010	871	1	0	0	0	0	1	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0011	871	1	1	0	0	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0012	871	1	1	0	0	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0013	871	1	1	0	0	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0014	871	1	1	0	0	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0015	871	1	1	0	0	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0016	871	1	1	0	0	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0017	871	1	0	1	0	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0018	871	1	0	0	1	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0019	871	1	1	0	0	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0020	871	1	0	0	1	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0021	871	1	1	0	0	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0022	871	1	0	0	1	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0023	871	1	1	0	0	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0024	871	1	0	0	1	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0025	871	1	0	0	0	0	1	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	t0026	871	1	0	0	1	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX2_chr10_123143136_123155672	1/1	t0001	793	271	54	56	109	13	37	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	t0002	793	81	30	6	33	3	9	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	t0003	794	41	0	2	39	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	t0004	793	27	0	4	23	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	t0005	792	8	0	7	1	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	t0006	793	5	5	0	0	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	t0007	793	3	0	0	0	0	3	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	t0008	793	2	2	0	0	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	t0009	793	2	2	0	0	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	t0010	793	1	0	0	0	0	1	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	t0011	793	1	1	0	0	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	t0012	793	1	0	0	1	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	t0013	793	1	1	0	0	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	t0014	794	1	0	0	1	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	t0015	793	1	1	0	0	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	t0016	793	1	0	1	0	0	0	copy fasta	HMX2	chr10	123143136	123155672