JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HMX2_chr10_123143136_123155672	0/0	t0017	793	1	0	0	1	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX3_chr10_123130970_123144423	0/0	t0001	1775	76	15	19	29	8	5	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0002	1774	51	3	3	39	0	6	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0003	1776	43	0	3	40	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0004	1776	39	6	14	8	1	10	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0005	1777	32	0	8	19	0	5	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0006	1777	24	0	7	17	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0007	1776	23	10	3	5	1	4	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	1/0	t0008	1774	16	8	3	0	1	3	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0009	1779	14	1	10	0	0	3	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0010	1775	11	1	3	7	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0011	1774	11	0	0	10	0	1	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0012	1775	10	4	3	3	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0013	1776	8	1	0	7	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0014	1776	6	3	1	2	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0015	1778	5	1	1	1	1	1	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0016	1774	5	5	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0017	1774	4	3	0	1	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0018	1776	4	0	2	0	2	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0019	1776	4	4	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0020	1774	4	4	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0021	1774	3	0	0	3	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0022	1774	3	0	0	3	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0023	1777	3	3	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0024	1777	3	0	0	2	0	1	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0025	1777	3	0	2	1	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0026	1776	2	0	0	2	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0027	1775	2	2	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/1	t0028	1775	2	1	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0029	1775	2	0	0	0	2	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0030	1775	2	2	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0031	1775	2	1	0	1	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0032	1777	2	0	0	2	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0033	1778	2	1	0	0	0	1	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0034	1775	2	2	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0035	1774	2	2	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0036	1775	1	0	0	1	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0037	1776	1	0	0	0	0	1	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0038	1777	1	0	0	1	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0039	1777	1	0	0	1	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0040	1774	1	0	0	0	0	1	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0041	1774	1	1	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0042	1774	1	1	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0043	1775	1	0	1	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0044	1774	1	1	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0045	1774	1	1	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0046	1774	1	1	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0047	1775	1	0	0	1	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0048	1776	1	0	0	1	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0049	1775	1	1	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423