Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANK3_chr10_60021298_60394875	0/0	t0051	3889	1	0	0	0	0	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0052	3889	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0053	3886	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0054	3887	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0055	3889	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0056	3887	1	0	0	0	0	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0057	3890	1	0	0	0	0	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0058	3890	1	0	1	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/1	t0059	3889	1	0	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	t0060	3887	1	0	0	0	0	1	copy fasta	ANK3	chr10	60021298	60394875
ANKAR_chr2_189669670_189751647	1/1	t0001	217	276	79	55	102	10	28	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	t0002	217	19	18	1	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	t0003	217	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKDD1A_chr15_64906902_64963691	0/0	t0001	1536	180	23	32	103	10	12	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/1	t0002	1533	86	27	14	24	3	17	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	1/0	t0003	1533	34	19	6	2	1	5	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	t0004	1533	15	15	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	t0005	1536	6	1	4	0	0	1	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	t0006	1532	6	0	4	1	0	1	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	t0007	1537	5	5	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	t0008	1536	2	2	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	t0009	1536	1	0	0	1	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	t0010	1536	1	0	0	1	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	t0011	1536	1	1	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	t0012	1533	1	1	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1B_chr5_75606453_75676846	0/1	t0001	997	109	15	23	55	4	11	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	1/0	t0002	989	73	3	10	48	2	9	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0003	987	61	13	4	35	1	8	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0004	987	39	22	9	5	0	3	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0005	963	33	3	4	25	0	1	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0006	997	13	12	1	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0007	993	10	9	1	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0008	965	7	0	5	0	1	1	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0009	987	6	0	0	6	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0010	988	5	0	0	5	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0011	989	2	1	1	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0012	996	2	2	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0013	997	2	2	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0014	997	2	0	2	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0015	987	1	0	0	1	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0016	987	1	0	0	0	0	1	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0017	997	1	0	0	1	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0018	996	1	0	1	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0019	981	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0020	964	1	0	1	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0021	973	1	0	0	1	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	t0022	987	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKEF1_chr20_10029987_10063303	0/0	t0001	3107	63	8	14	33	3	5	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0002	3107	39	3	4	28	4	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0003	3111	38	1	7	28	0	2	copy fasta	ANKEF1	chr20	10029987	10063303