JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HMX3_chr10_123130970_123144423	0/0	t0050	1774	1	0	0	1	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0051	1775	1	1	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0052	1774	1	0	0	1	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0053	1776	1	0	0	1	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0054	1777	1	1	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0055	1776	1	1	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0056	1777	1	0	0	1	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0057	1776	1	1	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0058	1776	1	0	0	1	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0059	1775	1	0	0	1	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0060	1776	1	0	0	0	0	1	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0061	1778	1	0	0	0	0	1	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0062	1778	1	0	0	1	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0063	1777	1	0	0	1	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0064	1777	1	0	1	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0065	1776	1	0	0	1	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0066	1778	1	0	1	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0067	1779	1	0	1	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0068	1774	1	0	0	0	0	1	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0069	1774	1	1	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0070	1775	1	1	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0071	1774	1	1	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0072	1775	1	1	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0073	1777	1	1	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	t0074	1775	1	0	0	0	0	1	copy fasta	HMX3	chr10	123130970	123144423
HNF1A_chr12_120973543_121007512	1/0	t0001	1547	155	65	24	44	8	13	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/1	t0002	1547	148	4	29	97	3	14	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	t0003	1547	57	12	4	39	0	2	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	t0004	1547	28	8	13	0	3	4	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	t0005	1547	4	0	0	4	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	t0006	1547	3	0	0	3	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	t0007	1546	3	3	0	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	t0008	1547	2	2	0	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	t0009	1547	1	0	0	1	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	t0010	1547	1	1	0	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	t0011	1547	1	0	1	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	t0012	1547	1	0	0	1	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	t0013	1547	1	0	1	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	t0014	1547	1	0	0	0	1	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	t0015	1547	1	1	0	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	t0016	1547	1	0	0	0	1	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	t0017	1547	1	0	0	0	0	1	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	t0018	1547	1	0	0	1	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1B_chr17_37681431_37750059	0/1	t0001	1117	140	14	24	76	10	15	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0002	1117	98	14	23	46	4	11	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0003	1117	44	2	4	32	0	6	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0004	1117	36	0	4	24	1	7	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0005	1117	34	25	6	0	2	1	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0006	1117	18	16	2	0	0	0	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0007	1117	10	10	0	0	0	0	copy fasta	HNF1B	chr17	37681431	37750059