JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HNF1B_chr17_37681431_37750059	0/0	t0008	1117	10	0	5	1	1	3	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0009	1117	5	5	0	0	0	0	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0010	1117	2	2	0	0	0	0	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0011	1117	2	0	0	2	0	0	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0012	1117	1	1	0	0	0	0	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0013	1117	1	1	0	0	0	0	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0014	1117	1	1	0	0	0	0	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0015	1117	1	1	0	0	0	0	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0016	1117	1	0	0	1	0	0	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0017	1117	1	0	0	1	0	0	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0018	1117	1	0	0	0	0	1	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0019	1117	1	0	0	1	0	0	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0020	1117	1	0	0	0	0	1	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	t0021	1117	1	0	0	0	0	1	copy fasta	HNF1B	chr17	37681431	37750059
HNF4A_chr20_44350699_44437845	0/0	t0001	3288	49	12	16	7	6	8	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0002	3288	34	2	2	21	1	8	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0003	3269	28	1	2	19	3	3	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0004	3288	22	2	1	19	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0005	3288	13	1	3	5	2	2	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0006	3288	9	0	6	1	1	1	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0007	3288	8	1	4	3	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0008	3287	8	5	3	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0009	3267	5	0	0	0	0	5	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0010	3287	5	5	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0011	3289	5	3	1	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0012	3288	4	4	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0013	3287	4	3	0	0	1	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0014	3269	4	0	0	4	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0015	3280	4	0	0	4	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0016	3268	3	0	0	2	0	1	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0017	3279	3	3	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0018	3288	3	2	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0019	3286	3	3	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0020	3280	3	0	0	2	0	1	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0021	3288	3	0	0	3	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0022	3287	3	0	0	3	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0023	3268	3	2	0	0	1	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0024	3270	3	0	1	1	0	1	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0025	3288	3	0	0	3	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0026	3259	2	0	0	0	1	1	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0027	3268	2	2	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0028	3280	2	0	0	2	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0029	3286	2	0	0	0	2	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0030	3272	2	0	0	0	0	2	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0031	3287	2	2	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0032	3280	2	2	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0033	3287	2	1	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0034	3289	2	1	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0035	3289	2	0	0	2	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0036	3268	2	0	0	2	0	0	copy fasta	HNF4A	chr20	44350699	44437845