JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
HNF4A_chr20_44350699_44437845	0/0	t0037	3287	2	2	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0038	3288	2	1	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0039	3280	1	0	0	1	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0040	3288	1	0	0	1	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0041	3268	1	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0042	3269	1	0	0	1	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0043	3288	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0044	3287	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0045	3288	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0046	3288	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0047	3288	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0048	3261	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0049	3267	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0050	3288	1	0	0	1	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0051	3288	1	0	0	0	1	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0052	3278	1	0	0	0	1	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0053	3279	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0054	3288	1	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0055	3280	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0056	3289	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0057	3269	1	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0058	3269	1	0	0	1	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0059	3280	1	0	0	0	1	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0060	3289	1	0	0	0	1	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0061	3288	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0062	3269	1	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0063	3268	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0064	3268	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0065	3269	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0066	3287	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0067	3287	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0068	3288	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/1	t0069	3278	1	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0070	3280	1	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0071	3281	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0072	3288	1	0	0	1	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0073	3280	1	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	1/0	t0074	3287	1	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0075	3287	1	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0076	3286	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0077	3286	1	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0078	3287	1	0	0	0	1	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0079	3288	1	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0080	3279	1	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0081	3279	1	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0082	3269	1	0	0	1	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0083	3176	1	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0084	3287	1	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0085	3288	1	0	0	0	1	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0086	3280	1	0	0	1	0	copy fasta	HNF4A	chr20	44350699	44437845