JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HNF4A_chr20_44350699_44437845	0/0	t0087	3287	1	1	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0088	3279	1	1	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0089	3286	1	1	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0090	3287	1	1	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0091	3280	1	0	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0092	3288	1	1	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0093	3288	1	0	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0094	3261	1	0	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0095	3269	1	1	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0096	3267	1	0	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0097	3431	1	1	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0098	3269	1	0	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0099	3268	1	0	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0100	3289	1	1	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0101	3279	1	0	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	t0102	3288	1	0	0	0	0	1	copy fasta	HNF4A	chr20	44350699	44437845
HNF4G_chr8_75534869_75571834	1/1	t0001	2833	161	17	28	88	7	19	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0002	2831	52	12	7	21	4	8	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0003	2833	41	10	2	25	1	3	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0004	2832	29	1	1	27	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0005	2832	27	19	5	0	1	2	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0006	2832	20	13	4	0	1	2	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0007	2833	20	0	4	9	2	5	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0008	2833	13	0	6	7	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0009	2833	5	5	0	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0010	2833	4	4	0	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0011	2832	3	2	1	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0012	2833	2	0	0	0	0	2	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0013	2832	2	0	0	2	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0014	2831	2	0	0	2	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0015	2833	2	0	0	0	2	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0016	2833	2	2	0	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0017	2831	1	1	0	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0018	2834	1	1	0	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0019	2833	1	0	0	1	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0020	2831	1	0	0	0	0	1	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0021	2834	1	0	0	1	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0022	2832	1	0	0	1	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0023	2832	1	1	0	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0024	2832	1	0	1	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	t0025	2833	1	0	1	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNMT_chr2_137959473_138021364	1/1	t0001	2254	183	37	36	74	8	26	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0002	2254	97	15	19	47	2	14	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0003	2254	18	18	0	0	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0004	2254	5	4	1	0	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0005	2254	3	3	0	0	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0006	2254	3	3	0	0	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0007	2254	3	0	0	3	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0008	2254	3	0	0	1	0	2	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0009	2254	2	0	2	0	0	0	copy fasta	HNMT	chr2	137959473	138021364