JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HNMT_chr2_137959473_138021364	0/0	t0010	2254	2	2	0	0	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0011	2254	2	0	0	2	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0012	2254	1	1	0	0	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0013	2254	1	1	0	0	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0014	2254	1	0	0	1	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0015	2254	1	1	0	0	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0016	2254	1	0	0	0	0	1	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0017	2254	1	0	0	1	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0018	2238	1	0	0	1	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0019	2254	1	0	1	0	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0020	2254	1	0	0	0	0	1	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0021	2254	1	1	0	0	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	t0022	2254	1	0	1	0	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNRNPA0_chr5_137740651_137759363	0/0	t0001	7796	80	24	8	38	2	8	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/1	t0002	7797	69	17	9	30	3	9	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0003	7793	30	7	8	8	0	7	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0004	7796	23	1	12	1	3	6	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0005	7797	20	5	4	11	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0006	7797	16	0	11	4	1	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0007	7798	11	3	1	7	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0008	7796	9	9	0	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0009	7796	7	6	1	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0010	7797	6	0	0	6	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0011	7793	5	0	0	0	0	5	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0012	7797	4	0	1	0	0	3	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0013	7797	4	1	2	1	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0014	7794	4	0	2	2	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0015	7794	4	0	1	1	1	1	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0016	7797	4	0	0	4	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0017	7798	4	0	0	4	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0018	7796	3	0	3	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0019	7797	3	0	0	3	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0020	7797	3	3	0	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0021	7797	3	0	0	3	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0022	7797	3	0	0	3	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0023	7797	3	1	0	0	2	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0024	7797	2	0	1	0	0	1	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	1/0	t0025	7796	2	1	0	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0026	7796	2	0	0	2	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0027	7798	2	0	0	1	0	1	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0028	7799	2	0	0	2	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0029	7799	2	2	0	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0030	7798	2	2	0	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0031	7793	1	1	0	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0032	7793	1	1	0	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0033	7794	1	0	0	0	0	1	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0034	7796	1	0	0	0	0	1	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0035	8095	1	0	0	1	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0036	7796	1	0	0	1	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0037	7796	1	0	0	1	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363