JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HNRNPA0_chr5_137740651_137759363	0/0	t0038	7796	1	0	1	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0039	7796	1	0	1	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0040	7796	1	1	0	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0041	7797	1	0	0	1	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0042	7797	1	0	0	1	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0043	7797	1	0	0	1	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0044	7797	1	1	0	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0045	7797	1	0	0	0	1	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0046	7797	1	0	1	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0047	7797	1	1	0	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0048	7798	1	0	0	1	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0049	7798	1	0	0	1	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0050	7796	1	0	0	1	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0051	7797	1	0	0	1	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0052	7797	1	0	1	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0053	7798	1	0	0	1	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0054	7798	1	0	0	1	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0055	7798	1	0	0	0	0	1	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0056	7798	1	0	0	1	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0057	7798	1	0	0	0	0	1	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0058	7799	1	0	0	0	0	1	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0059	7799	1	1	0	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0060	7797	1	0	0	0	0	1	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0061	7796	1	1	0	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0062	7793	1	0	0	0	1	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0063	7794	1	0	0	1	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0064	7798	1	0	0	1	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0065	7796	1	0	0	0	0	1	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	t0066	7797	1	1	0	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA1L2_chr13_52637431_52648773	1/1	t0001	381	397	83	77	184	14	37	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	t0002	381	15	6	2	4	0	3	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	t0003	381	6	0	0	6	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	t0004	381	6	6	0	0	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	t0005	382	5	0	0	5	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	t0006	381	2	0	0	2	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	t0007	381	2	1	1	0	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	t0008	382	1	1	0	0	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	t0009	381	1	1	0	0	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	t0010	381	1	0	0	1	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L3_chr16_51640757_51652079	1/1	t0001	361	364	54	65	191	12	40	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	t0002	361	37	29	5	0	0	3	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	t0003	361	7	6	1	0	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	t0004	362	5	0	1	4	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	t0005	362	3	3	0	0	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	t0006	361	2	0	2	0	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	t0007	361	1	1	0	0	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	t0008	361	1	1	0	0	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	t0009	361	1	0	0	0	0	1	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	t0010	361	1	0	0	1	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1_chr12_54275726_54292087	1/1	t0001	2626	254	77	51	84	13	27	copy fasta	HNRNPA1	chr12	54275726	54292087