JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HNRNPA1_chr12_54275726_54292087	0/0	t0002	2626	94	9	17	58	1	9	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA1_chr12_54275726_54292087	0/0	t0003	2626	7	0	1	6	0	0	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA1_chr12_54275726_54292087	0/0	t0004	2626	4	3	1	0	0	0	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA1_chr12_54275726_54292087	0/0	t0005	2626	2	0	0	2	0	0	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA1_chr12_54275726_54292087	0/0	t0006	2626	2	2	0	0	0	0	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA1_chr12_54275726_54292087	0/0	t0007	2626	2	0	2	0	0	0	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA1_chr12_54275726_54292087	0/0	t0008	2626	2	0	0	0	0	2	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA1_chr12_54275726_54292087	0/0	t0009	2626	1	1	0	0	0	0	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA1_chr12_54275726_54292087	0/0	t0010	2626	1	1	0	0	0	0	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA1_chr12_54275726_54292087	0/0	t0011	2626	1	0	0	0	0	1	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA1_chr12_54275726_54292087	0/0	t0012	2626	1	1	0	0	0	0	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA1_chr12_54275726_54292087	0/0	t0013	2626	1	0	0	1	0	0	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA1_chr12_54275726_54292087	0/0	t0014	2636	1	0	0	1	0	0	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA1_chr12_54275726_54292087	0/0	t0015	2626	1	0	0	1	0	0	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA1_chr12_54275726_54292087	0/0	t0016	2626	1	0	0	1	0	0	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA1_chr12_54275726_54292087	0/0	t0017	2626	1	0	0	0	0	1	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA2B1_chr7_26184927_26205746	1/1	t0001	2603	286	66	51	119	13	35	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	t0002	2603	77	2	8	63	0	4	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	t0003	2603	25	21	4	0	0	0	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	t0004	2603	10	0	0	10	0	0	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	t0005	2603	6	0	0	4	0	2	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	t0006	2603	6	6	0	0	0	0	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	t0007	2603	5	0	4	1	0	0	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	t0008	2597	3	0	0	3	0	0	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	t0009	2603	3	3	0	0	0	0	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	t0010	2603	2	0	0	0	0	2	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	t0011	2603	2	0	0	2	0	0	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	t0012	2603	1	0	0	0	0	1	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	t0013	2603	1	0	0	0	0	1	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	t0014	2603	1	0	0	1	0	0	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	t0015	2603	1	0	0	1	0	0	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	t0016	2603	1	0	0	0	0	1	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	t0017	2603	1	0	1	0	0	0	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	t0018	2603	1	0	0	0	1	0	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA3_chr2_177207794_177228959	0/0	t0001	4574	152	13	39	74	4	22	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0002	4574	50	6	6	35	0	3	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0003	4574	13	7	3	0	2	1	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0004	4574	10	10	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0005	4574	9	7	2	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0006	4575	7	7	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0007	4575	7	0	4	2	0	1	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0008	4574	7	5	1	0	0	1	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0009	4574	6	6	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0010	4575	5	5	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0011	4575	5	5	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0012	4575	4	0	0	2	0	2	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0013	4575	4	0	0	4	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0014	4574	4	4	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0015	4575	4	4	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0016	4574	4	4	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959