JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HNRNPA3_chr2_177207794_177228959	0/0	t0017	4574	3	0	1	2	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0018	4572	3	2	1	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0019	4572	3	3	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0020	4574	2	0	0	0	0	2	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0021	4574	2	0	0	2	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0022	4575	2	0	0	2	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0023	4575	2	2	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0024	4574	1	0	0	1	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0025	4575	1	1	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0026	4574	1	0	0	1	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0027	4574	1	0	0	1	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0028	4574	1	0	0	0	0	1	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0029	4574	1	0	0	1	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0030	4574	1	0	0	1	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0031	4574	1	0	0	1	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0032	4574	1	0	0	1	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0033	4574	1	1	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0034	4574	1	0	1	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0035	4574	1	0	1	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0036	4574	1	0	0	1	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0037	4574	1	1	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0038	4574	1	1	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0039	4564	1	0	0	1	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0040	4574	1	0	0	0	0	1	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0041	4575	1	1	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0042	4574	1	1	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0043	4574	1	0	0	1	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0044	4574	1	0	0	1	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0045	4572	1	1	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0046	4572	1	1	0	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	t0047	4561	1	0	1	0	0	0	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPAB_chr5_178199533_178216163	1/0	t0001	772	315	91	54	126	12	31	copy fasta	HNRNPAB	chr5	178199533	178216163
HNRNPAB_chr5_178199533_178216163	0/1	t0002	772	140	8	26	84	6	15	copy fasta	HNRNPAB	chr5	178199533	178216163
HNRNPAB_chr5_178199533_178216163	0/0	t0003	772	1	0	0	1	0	0	copy fasta	HNRNPAB	chr5	178199533	178216163
HNRNPAB_chr5_178199533_178216163	0/0	t0004	772	1	0	1	0	0	0	copy fasta	HNRNPAB	chr5	178199533	178216163
HNRNPAB_chr5_178199533_178216163	0/0	t0005	772	1	0	1	0	0	0	copy fasta	HNRNPAB	chr5	178199533	178216163
HNRNPAB_chr5_178199533_178216163	0/0	t0006	772	1	0	0	0	0	1	copy fasta	HNRNPAB	chr5	178199533	178216163
HNRNPAB_chr5_178199533_178216163	0/0	t0007	772	1	1	0	0	0	0	copy fasta	HNRNPAB	chr5	178199533	178216163
HNRNPAB_chr5_178199533_178216163	0/0	t0008	772	1	0	0	1	0	0	copy fasta	HNRNPAB	chr5	178199533	178216163
HNRNPAB_chr5_178199533_178216163	0/0	t0009	772	1	0	0	0	0	1	copy fasta	HNRNPAB	chr5	178199533	178216163
HNRNPCL1_chr1_12842377_12853720	0/1	t0001	253	179	32	30	95	8	13	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	1/0	t0002	253	111	28	26	38	3	15	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	t0003	253	26	9	9	5	1	2	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	t0004	239	18	0	0	15	1	2	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	t0005	253	6	6	0	0	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	t0006	253	5	0	2	0	3	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	t0007	253	4	4	0	0	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	t0008	239	2	1	1	0	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	t0009	239	1	0	0	1	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	t0010	239	1	0	0	1	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720