JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HNRNPDL_chr4_82417569_82435462	0/1	t0001	3090	87	5	12	59	2	8	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0002	3090	82	8	26	25	7	16	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0003	3069	35	4	7	17	2	5	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	1/0	t0004	3110	27	19	5	0	0	2	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0005	3090	26	12	4	8	1	1	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0006	3089	15	15	0	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0007	3090	9	9	0	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0008	3090	9	0	0	8	1	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0009	3090	5	3	2	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0010	3090	5	0	0	5	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0011	3090	4	4	0	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0012	3069	4	0	0	4	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0013	3090	3	0	0	3	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0014	3088	3	0	0	0	0	3	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0015	3089	3	3	0	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0016	3089	2	0	0	0	0	2	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0017	3090	2	0	1	0	0	1	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0018	3090	2	0	0	2	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0019	3110	2	2	0	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0020	3110	2	2	0	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0021	3090	2	0	1	0	1	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0022	3089	2	2	0	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0023	3069	1	0	0	0	0	1	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0024	3090	1	0	0	1	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0025	3102	1	0	0	1	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0026	3090	1	0	0	1	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0027	3090	1	0	0	1	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0028	3090	1	1	0	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0029	3090	1	1	0	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0030	3090	1	0	0	1	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0031	3090	1	1	0	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0032	3090	1	0	0	1	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0033	3090	1	0	0	1	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0034	3090	1	1	0	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0035	3090	1	0	0	1	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0036	3070	1	1	0	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0037	3089	1	1	0	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0038	3090	1	0	0	1	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	t0039	3090	1	0	0	0	0	1	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPD_chr4_82347498_82378991	1/0	t0001	2001	82	11	23	25	2	20	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	t0002	2000	81	35	3	41	0	2	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/1	t0003	2000	78	3	6	61	5	2	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	t0004	2000	35	8	10	4	3	10	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	t0005	2000	16	0	0	16	0	0	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	t0006	2000	9	5	4	0	0	0	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	t0007	2000	6	6	0	0	0	0	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	t0008	2001	4	1	1	0	2	0	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	t0009	2001	4	4	0	0	0	0	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	t0010	2001	3	3	0	0	0	0	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	t0011	2000	2	2	0	0	0	0	copy fasta	HNRNPD	chr4	82347498	82378991