Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKEF1_chr20_10029987_10063303	0/0	t0004	3115	24	0	8	16	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0005	3111	19	9	2	6	1	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0006	3083	19	11	2	0	1	5	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0007	3095	17	2	7	0	2	6	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0008	3107	14	2	2	10	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0009	3087	12	1	2	6	2	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0010	3103	10	3	0	7	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0011	3075	9	8	0	0	0	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	1/0	t0012	3099	8	2	2	0	0	3	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/1	t0013	3083	7	0	4	0	2	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0014	3099	7	6	1	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0015	3115	7	1	0	6	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0016	3119	7	0	1	6	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0017	3083	5	0	0	2	0	3	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0018	3083	5	0	3	0	0	2	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0019	3087	4	0	2	0	1	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0020	3107	3	2	1	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0021	3103	3	1	0	1	0	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0022	3111	3	1	0	2	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0023	3087	3	0	2	0	0	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0024	3099	2	2	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0025	3087	2	0	2	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0026	3091	2	0	0	0	0	2	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0027	3099	2	0	2	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0028	3103	2	2	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0029	3103	2	0	1	1	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0030	3083	2	2	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0031	3087	2	2	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0032	3107	2	2	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0033	3107	2	0	1	1	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0034	3103	2	0	0	2	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0035	3091	2	0	0	0	0	2	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0036	3103	2	0	2	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0037	3107	2	2	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0038	3091	2	0	0	0	1	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0039	3103	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0040	3087	1	0	1	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0041	3115	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0042	3107	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0043	3079	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0044	3083	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0045	3083	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0046	3075	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0047	3083	1	0	0	0	0	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0048	3099	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0049	3107	1	0	1	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0050	3111	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0051	3123	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0052	3099	1	0	0	1	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	t0053	3107	1	0	1	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303