JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HNRNPD_chr4_82347498_82378991	0/0	t0012	2000	2	2	0	0	0	0	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	t0013	2000	2	1	1	0	0	0	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	t0014	2001	2	2	0	0	0	0	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	t0015	2000	1	0	0	1	0	0	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	t0016	2000	1	0	0	1	0	0	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	t0017	2001	1	1	0	0	0	0	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	t0018	2001	1	1	0	0	0	0	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	t0019	2000	1	1	0	0	0	0	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	t0020	2000	1	0	0	1	0	0	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPF_chr10_43380618_43414186	1/1	t0001	1322	141	10	32	77	6	14	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	t0002	1322	109	57	22	9	4	17	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	t0003	1322	60	8	7	39	0	6	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	t0004	1322	12	0	1	7	1	3	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	t0005	1322	10	0	5	5	0	0	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	t0006	1322	10	10	0	0	0	0	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	t0007	1323	5	0	0	5	0	0	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	t0008	1322	3	0	0	3	0	0	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	t0009	1322	3	0	2	0	0	1	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	t0010	1322	2	0	0	2	0	0	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	t0011	1322	2	2	0	0	0	0	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	t0012	1322	1	0	0	0	0	1	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	t0013	1322	1	0	1	0	0	0	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	t0014	1322	1	0	0	1	0	0	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	t0015	1322	1	0	0	0	1	0	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	t0016	1322	1	1	0	0	0	0	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	t0017	1322	1	1	0	0	0	0	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	t0018	1322	1	1	0	0	0	0	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPH1_chr5_179609178_179628671	0/0	t0001	892	170	8	25	114	3	20	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0002	889	81	11	17	36	7	10	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0003	888	48	6	13	22	3	4	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0004	893	34	10	12	5	1	6	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0005	890	26	20	4	1	0	1	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0006	890	15	14	1	0	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0007	891	12	1	1	9	0	1	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/1	t0008	887	9	2	2	4	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	1/0	t0009	891	5	4	0	0	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0010	893	4	4	0	0	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0011	889	3	3	0	0	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0012	888	3	0	1	0	0	2	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0013	892	3	3	0	0	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0014	890	3	3	0	0	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0015	892	1	0	0	0	0	1	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0016	888	1	1	0	0	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0017	889	1	1	0	0	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0018	889	1	0	0	0	0	1	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0019	889	1	1	0	0	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0020	892	1	0	0	0	0	1	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0021	891	1	1	0	0	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0022	892	1	1	0	0	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0023	889	1	0	0	1	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671