JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HNRNPH1_chr5_179609178_179628671	0/0	t0024	890	1	1	0	0	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0025	892	1	1	0	0	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0026	891	1	0	0	1	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0027	889	1	0	0	1	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH1_chr5_179609178_179628671	0/0	t0028	892	1	0	0	0	0	1	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH2_chrX_101403222_101419133	1/1	t0001	947	230	56	36	111	10	15	copy fasta	HNRNPH2	chrX	101403222	101419133
HNRNPH2_chrX_101403222_101419133	0/0	t0002	947	46	5	10	22	0	9	copy fasta	HNRNPH2	chrX	101403222	101419133
HNRNPH2_chrX_101403222_101419133	0/0	t0003	943	23	13	0	4	0	6	copy fasta	HNRNPH2	chrX	101403222	101419133
HNRNPH2_chrX_101403222_101419133	0/0	t0004	946	2	0	0	2	0	0	copy fasta	HNRNPH2	chrX	101403222	101419133
HNRNPH2_chrX_101403222_101419133	0/0	t0005	946	2	0	1	0	1	0	copy fasta	HNRNPH2	chrX	101403222	101419133
HNRNPH2_chrX_101403222_101419133	0/0	t0006	947	2	0	2	0	0	0	copy fasta	HNRNPH2	chrX	101403222	101419133
HNRNPH2_chrX_101403222_101419133	0/0	t0007	943	1	1	0	0	0	0	copy fasta	HNRNPH2	chrX	101403222	101419133
HNRNPH2_chrX_101403222_101419133	0/0	t0008	946	1	0	0	1	0	0	copy fasta	HNRNPH2	chrX	101403222	101419133
HNRNPH2_chrX_101403222_101419133	0/0	t0009	947	1	1	0	0	0	0	copy fasta	HNRNPH2	chrX	101403222	101419133
HNRNPH3_chr10_68327064_68348193	0/1	t0001	1316	253	34	45	136	12	25	copy fasta	HNRNPH3	chr10	68327064	68348193
HNRNPH3_chr10_68327064_68348193	0/0	t0002	1316	63	28	7	25	0	3	copy fasta	HNRNPH3	chr10	68327064	68348193
HNRNPH3_chr10_68327064_68348193	0/0	t0003	1316	59	3	17	22	1	16	copy fasta	HNRNPH3	chr10	68327064	68348193
HNRNPH3_chr10_68327064_68348193	1/0	t0004	1316	12	10	0	0	1	0	copy fasta	HNRNPH3	chr10	68327064	68348193
HNRNPH3_chr10_68327064_68348193	0/0	t0005	1316	8	6	1	0	0	1	copy fasta	HNRNPH3	chr10	68327064	68348193
HNRNPH3_chr10_68327064_68348193	0/0	t0006	1316	4	1	0	2	0	1	copy fasta	HNRNPH3	chr10	68327064	68348193
HNRNPH3_chr10_68327064_68348193	0/0	t0007	1316	2	2	0	0	0	0	copy fasta	HNRNPH3	chr10	68327064	68348193
HNRNPH3_chr10_68327064_68348193	0/0	t0008	1316	2	2	0	0	0	0	copy fasta	HNRNPH3	chr10	68327064	68348193
HNRNPH3_chr10_68327064_68348193	0/0	t0009	1316	1	0	0	1	0	0	copy fasta	HNRNPH3	chr10	68327064	68348193
HNRNPK_chr9_83963083_83985215	1/1	t0001	1495	240	31	35	130	15	27	copy fasta	HNRNPK	chr9	83963083	83985215
HNRNPK_chr9_83963083_83985215	0/0	t0002	1495	74	20	5	42	0	7	copy fasta	HNRNPK	chr9	83963083	83985215
HNRNPK_chr9_83963083_83985215	0/0	t0003	1495	44	29	1	13	0	1	copy fasta	HNRNPK	chr9	83963083	83985215
HNRNPK_chr9_83963083_83985215	0/0	t0004	1495	43	13	18	0	3	9	copy fasta	HNRNPK	chr9	83963083	83985215
HNRNPK_chr9_83963083_83985215	0/0	t0005	1495	4	0	2	2	0	0	copy fasta	HNRNPK	chr9	83963083	83985215
HNRNPK_chr9_83963083_83985215	0/0	t0006	1495	3	0	3	0	0	0	copy fasta	HNRNPK	chr9	83963083	83985215
HNRNPK_chr9_83963083_83985215	0/0	t0007	1495	1	1	0	0	0	0	copy fasta	HNRNPK	chr9	83963083	83985215
HNRNPK_chr9_83963083_83985215	0/0	t0008	1495	1	1	0	0	0	0	copy fasta	HNRNPK	chr9	83963083	83985215
HNRNPK_chr9_83963083_83985215	0/0	t0009	1495	1	0	1	0	0	0	copy fasta	HNRNPK	chr9	83963083	83985215
HNRNPK_chr9_83963083_83985215	0/0	t0010	1495	1	1	0	0	0	0	copy fasta	HNRNPK	chr9	83963083	83985215
HNRNPK_chr9_83963083_83985215	0/0	t0011	1495	1	0	1	0	0	0	copy fasta	HNRNPK	chr9	83963083	83985215
HNRNPK_chr9_83963083_83985215	0/0	t0012	1495	1	0	0	1	0	0	copy fasta	HNRNPK	chr9	83963083	83985215
HNRNPLL_chr2_38556969_38607928	1/1	t0001	2516	167	26	39	67	8	25	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0002	2516	57	25	8	24	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0003	2516	30	9	1	15	3	2	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0004	2516	20	1	2	13	1	3	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0005	2516	10	1	7	0	1	1	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0006	2516	8	0	0	8	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0007	2516	6	6	0	0	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0008	2516	5	0	0	5	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0009	2516	5	5	0	0	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0010	2516	5	4	1	0	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0011	2516	4	3	1	0	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0012	2516	4	0	0	4	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0013	2516	3	3	0	0	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0014	2516	2	0	0	0	0	2	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0015	2516	2	0	1	0	1	0	copy fasta	HNRNPLL	chr2	38556969	38607928