JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HNRNPLL_chr2_38556969_38607928	0/0	t0016	2516	2	2	0	0	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0017	2516	1	0	0	0	0	1	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0018	2516	1	1	0	0	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0019	2516	1	1	0	0	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0020	2516	1	0	0	1	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0021	2516	1	0	0	1	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0022	2516	1	1	0	0	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0023	2516	1	1	0	0	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	t0024	2516	1	1	0	0	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPL_chr19_38831370_38854986	0/1	t0001	372	96	15	26	38	4	12	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	1/0	t0002	373	84	21	15	33	2	12	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	t0003	374	68	4	4	57	0	3	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	t0004	370	45	12	6	19	0	8	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	t0005	371	29	11	4	5	5	4	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	t0006	373	18	14	4	0	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	t0007	372	13	7	4	2	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	t0008	375	12	3	2	5	0	2	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	t0009	376	8	2	2	0	2	2	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	t0010	369	7	2	1	2	1	1	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	t0011	373	2	0	0	2	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	t0012	375	2	1	0	1	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	t0013	376	2	2	0	0	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	t0014	358	1	0	1	0	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	t0015	371	1	1	0	0	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	t0016	372	1	1	0	0	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	t0017	371	1	0	1	0	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	t0018	374	1	0	0	1	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	t0019	373	1	0	0	1	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPM_chr19_8439975_8494114	1/1	t0001	285	360	92	66	134	18	48	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPR_chr1_23299688_23349284	0/0	t0001	5849	113	22	18	61	3	9	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0002	5849	70	8	9	38	3	12	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0003	5846	31	2	10	11	0	8	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0004	5849	24	20	4	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0005	5848	16	14	2	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0006	5848	16	0	4	11	0	1	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0007	5846	15	0	0	14	0	1	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/1	t0008	5848	11	0	3	2	1	4	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0009	5849	6	6	0	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0010	5849	4	0	0	4	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0011	5847	3	0	0	2	0	1	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0012	5845	3	0	0	0	2	1	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0013	5849	2	0	0	2	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0014	5849	2	2	0	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0015	5849	2	0	1	0	1	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0016	5848	2	2	0	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0017	5848	2	1	1	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0018	5848	1	1	0	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	1/0	t0019	5850	1	0	0	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0020	5850	1	0	0	0	1	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0021	5850	1	0	1	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284