JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HNRNPR_chr1_23299688_23349284	0/0	t0022	5848	1	1	0	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0023	5849	1	1	0	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0024	5849	1	0	0	0	0	1	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0025	5849	1	0	0	1	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0026	5849	1	0	0	1	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0027	5849	1	0	0	1	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0028	5849	1	0	0	1	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0029	5849	1	0	0	0	0	1	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0030	5849	1	0	0	1	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0031	5849	1	0	0	0	0	1	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0032	5849	1	0	0	1	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0033	5849	1	0	0	1	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0034	5846	1	1	0	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0035	5848	1	0	1	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0036	5848	1	1	0	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0037	5848	1	1	0	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0038	5845	1	0	0	1	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0039	5848	1	0	0	1	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0040	5848	1	1	0	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0041	5848	1	1	0	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0042	5848	1	1	0	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0043	5848	1	0	1	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0044	5849	1	0	0	0	1	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0045	5846	1	0	1	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0046	5848	1	1	0	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0047	5848	1	0	0	1	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0048	5849	1	0	0	1	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	t0049	5849	1	1	0	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPUL1_chr19_41259372_41312787	1/1	t0001	1355	230	68	42	86	10	22	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	t0002	1355	24	6	8	4	1	5	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	t0003	1356	12	3	2	4	0	3	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	t0004	1355	8	1	5	0	1	1	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	t0005	1356	6	1	0	0	0	5	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	t0006	1356	3	0	3	0	0	0	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	t0007	1355	3	3	0	0	0	0	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	t0008	1355	2	0	0	0	0	2	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	t0009	1355	1	0	0	1	0	0	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	t0010	1355	1	0	0	1	0	0	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL2_chr11_62707630_62732457	1/1	t0001	2971	168	38	31	67	9	21	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0002	2972	69	7	14	44	0	4	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0003	2971	19	0	1	18	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0004	2973	13	1	4	6	0	2	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0005	2971	11	10	1	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0006	2972	11	1	5	3	1	1	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0007	2971	7	7	0	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0008	2971	6	5	1	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0009	2971	6	0	0	6	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0010	2974	4	0	1	3	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0011	2971	3	3	0	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0012	2972	3	3	0	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457