JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HNRNPUL2_chr11_62707630_62732457	0/0	t0013	2973	3	0	0	2	0	1	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0014	2974	3	0	0	3	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0015	2971	2	1	1	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0016	2971	2	0	0	0	0	2	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0017	2972	2	2	0	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0018	2973	2	2	0	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0019	2977	2	0	2	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0020	2971	1	1	0	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0021	2972	1	1	0	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0022	2971	1	0	0	1	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0023	2971	1	0	0	1	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0024	2971	1	1	0	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0025	2971	1	1	0	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0026	2971	1	0	0	0	0	1	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0027	2972	1	0	0	1	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0028	2972	1	0	1	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0029	2972	1	1	0	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0030	2971	1	0	0	0	0	1	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0031	2972	1	1	0	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0032	2974	1	0	0	1	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0033	2978	1	0	0	0	0	1	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0034	2971	1	0	0	1	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	t0035	2972	1	0	0	1	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPU_chr1_244845297_244869543	0/1	t0001	4389	202	39	43	78	10	31	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0002	4389	37	0	0	37	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0003	4388	29	11	9	0	1	8	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0004	4388	8	7	1	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0005	4388	7	6	1	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0006	4388	7	0	0	7	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0007	4390	6	1	0	4	1	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0008	4389	6	6	0	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0009	4390	5	3	2	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0010	4389	3	3	0	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0011	4388	3	0	0	3	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0012	4389	3	3	0	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0013	4390	3	3	0	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0014	4389	2	0	2	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0015	4388	2	1	1	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0016	4390	2	0	0	2	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0017	4390	2	0	0	0	0	2	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0018	4389	1	0	0	1	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0019	4389	1	1	0	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0020	4389	1	0	0	1	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0021	4388	1	1	0	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0022	4389	1	0	0	0	0	1	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	1/0	t0023	4390	1	0	0	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0024	4390	1	1	0	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0025	4389	1	1	0	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0026	4389	1	0	1	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0027	4388	1	1	0	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543