JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HNRNPU_chr1_244845297_244869543	0/0	t0028	4388	1	0	1	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0029	4389	1	0	0	1	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0030	4389	1	0	0	1	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0031	4389	1	0	0	1	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0032	4388	1	0	1	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0033	4389	1	1	0	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0034	4391	1	1	0	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0035	4389	1	1	0	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	t0036	4389	1	1	0	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HOATZ_chr11_111509778_111542043	1/1	t0001	224	284	72	63	102	10	35	copy fasta	HOATZ	chr11	111509778	111542043
HOATZ_chr11_111509778_111542043	0/0	t0002	223	27	23	3	0	0	1	copy fasta	HOATZ	chr11	111509778	111542043
HOATZ_chr11_111509778_111542043	0/0	t0003	224	1	1	0	0	0	0	copy fasta	HOATZ	chr11	111509778	111542043
HOGA1_chr10_97579389_97617802	1/1	t0001	1459	242	27	47	120	12	34	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0002	1461	61	21	10	25	0	5	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0003	1460	44	18	10	7	4	5	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0004	1459	12	1	8	3	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0005	1459	12	12	0	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0006	1460	6	0	0	6	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0007	1459	5	0	0	5	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0008	1461	4	0	0	4	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0009	1460	4	0	2	1	0	1	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0010	1459	4	4	0	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0011	1460	3	3	0	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0012	1460	3	3	0	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0013	1460	2	2	0	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0014	1459	2	0	0	2	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0015	1461	2	0	2	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0016	1461	2	1	0	0	0	1	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0017	1459	1	1	0	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0018	1459	1	0	0	1	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0019	1461	1	0	0	1	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0020	1459	1	0	1	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0021	1459	1	0	0	1	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0022	1459	1	0	0	1	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0023	1460	1	1	0	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0024	1460	1	0	1	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0025	1459	1	0	0	1	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0026	1460	1	1	0	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0027	1460	1	0	1	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0028	1460	1	1	0	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0029	1461	1	1	0	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	t0030	1461	1	1	0	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOMER1_chr5_79367636_79519134	0/0	t0001	4734	62	15	13	27	1	6	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	1/0	t0002	4734	51	5	18	18	3	6	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0003	4734	31	6	4	20	0	1	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0004	4734	24	9	1	13	0	1	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0005	4735	23	7	7	6	2	1	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/1	t0006	4735	11	7	1	1	0	1	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0007	4734	11	2	4	3	0	2	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0008	4735	11	0	1	7	1	2	copy fasta	HOMER1	chr5	79367636	79519134