JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOMER1_chr5_79367636_79519134	0/0	t0009	4734	6	2	0	4	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0010	4734	6	4	0	2	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0011	4734	4	4	0	0	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0012	4722	3	3	0	0	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0013	4733	3	3	0	0	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0014	4735	3	2	1	0	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0015	4734	3	0	2	1	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0016	4734	3	0	0	3	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0017	4734	3	0	0	3	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0018	4734	2	2	0	0	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0019	4735	2	0	0	2	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0020	4734	2	1	0	1	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0021	4733	2	1	0	0	1	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0022	4735	2	0	0	1	0	1	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0023	4721	1	1	0	0	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0024	4735	1	0	0	1	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0025	4734	1	0	0	0	0	1	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0026	4733	1	0	0	1	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0027	4733	1	0	0	1	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0028	4735	1	1	0	0	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0029	4735	1	1	0	0	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0030	4734	1	1	0	0	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0031	4735	1	1	0	0	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0032	4735	1	0	0	1	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0033	4735	1	0	0	1	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0034	4734	1	1	0	0	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0035	4734	1	0	0	0	0	1	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0036	4734	1	0	0	1	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0037	4734	1	0	0	1	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0038	4733	1	1	0	0	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0039	4733	1	0	0	1	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0040	4735	1	1	0	0	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0041	4734	1	0	0	0	0	1	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0042	4734	1	1	0	0	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0043	4735	1	0	0	1	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	t0044	4734	1	0	0	1	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER2_chr15_82843983_82957720	1/1	t0001	918	307	88	65	122	11	19	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	t0002	919	12	1	3	7	0	1	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	t0003	925	7	0	4	0	1	2	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	t0004	918	5	0	3	2	0	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	t0005	918	4	0	0	4	0	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	t0006	918	4	0	0	0	0	4	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	t0007	919	3	2	1	0	0	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	t0008	918	1	0	0	1	0	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	t0009	919	1	1	0	0	0	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	t0010	919	1	1	0	0	0	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	t0011	918	1	0	1	0	0	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	t0012	918	1	0	1	0	0	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	t0013	918	1	1	0	0	0	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER3_chr19_18924203_18946217	1/1	t0001	475	380	89	68	169	11	41	copy fasta	HOMER3	chr19	18924203	18946217