JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HOMER3_chr19_18924203_18946217	0/0	t0002	475	27	11	5	0	6	5	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	t0003	475	3	0	1	0	0	2	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	t0004	475	1	0	0	0	1	0	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	t0005	475	1	0	0	1	0	0	copy fasta	HOMER3	chr19	18924203	18946217
HOMEZ_chr14_23267422_23291132	0/1	t0001	3334	144	24	18	76	6	19	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	1/0	t0002	3334	143	14	35	75	4	14	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0003	3334	12	11	0	0	0	1	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0004	3334	11	10	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0005	3334	7	0	6	0	1	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0006	3334	7	0	0	7	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0007	3334	7	0	0	7	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0008	3334	7	7	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0009	3334	6	6	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0010	3338	3	2	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0011	3334	3	0	0	3	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0012	3300	2	0	0	2	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0013	3334	2	2	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0014	3334	2	0	2	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0015	3334	2	0	0	0	0	2	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0016	3334	2	2	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0017	3334	2	1	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0018	3334	2	2	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0019	3334	2	1	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0020	3334	1	0	0	1	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0021	3334	1	0	0	1	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0022	3224	1	0	0	1	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0023	3334	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0024	3334	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0025	3334	1	0	0	1	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0026	3334	1	0	0	0	1	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0027	3334	1	0	0	1	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0028	3309	1	0	0	1	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0029	3334	1	0	0	0	0	1	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0030	3334	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0031	3334	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0032	3334	1	0	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0033	3314	1	0	0	1	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0034	3334	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0035	3284	1	0	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0036	3334	1	0	0	0	1	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0037	3324	1	0	0	1	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0038	3334	1	0	0	0	0	1	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0039	3304	1	0	0	0	1	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0040	3334	1	0	0	1	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0041	3334	1	0	0	1	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0042	3334	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0043	3334	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0044	3334	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0045	3334	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	t0046	3334	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132